data_4CKJ # _model_server_result.job_id MfVEJS0rfhGLvBWY3OnfMw _model_server_result.datetime_utc '2024-11-22 09:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ckj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2014}' # _entry.id 4CKJ # _exptl.entry_id 4CKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.76 _cell.angle_gamma 90 _cell.entry_id 4CKJ _cell.length_a 73.19 _cell.length_b 69.09 _cell.length_c 78.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 73.19 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 4CKJ _atom_sites.fract_transf_matrix[1][1] 0.013663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002844 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 2014 2014 ADN ADN . C 3 FMT A 1 2015 2015 FMT FMT . D 3 FMT A 1 2016 2016 FMT FMT . E 3 FMT A 1 2017 2017 FMT FMT . F 3 FMT A 1 2018 2018 FMT FMT . G 3 FMT A 1 2019 2019 FMT FMT . H 3 FMT A 1 2020 2020 FMT FMT . I 3 FMT A 1 2021 2021 FMT FMT . J 3 FMT A 1 2022 2022 FMT FMT . K 3 FMT A 1 2023 2023 FMT FMT . L 3 FMT A 1 2024 2024 FMT FMT . M 3 FMT A 1 2025 2025 FMT FMT . N 3 FMT A 1 2026 2026 FMT FMT . O 3 FMT A 1 2027 2027 FMT FMT . P 3 FMT A 1 2028 2028 FMT FMT . Q 3 FMT A 1 2029 2029 FMT FMT . R 3 FMT A 1 2030 2030 FMT FMT . S 4 HOH A 1 3000 3000 HOH HOH . S 4 HOH A 2 3001 3001 HOH HOH . S 4 HOH A 3 3002 3002 HOH HOH . S 4 HOH A 4 3003 3003 HOH HOH . S 4 HOH A 5 3004 3004 HOH HOH . S 4 HOH A 6 3005 3005 HOH HOH . S 4 HOH A 7 3006 3006 HOH HOH . S 4 HOH A 8 3007 3007 HOH HOH . S 4 HOH A 9 3008 3008 HOH HOH . S 4 HOH A 10 3009 3009 HOH HOH . S 4 HOH A 11 3010 3010 HOH HOH . S 4 HOH A 12 3011 3011 HOH HOH . S 4 HOH A 13 3012 3012 HOH HOH . S 4 HOH A 14 3013 3013 HOH HOH . S 4 HOH A 15 3014 3014 HOH HOH . S 4 HOH A 16 3015 3015 HOH HOH . S 4 HOH A 17 3016 3016 HOH HOH . S 4 HOH A 18 3017 3017 HOH HOH . S 4 HOH A 19 3018 3018 HOH HOH . S 4 HOH A 20 3019 3019 HOH HOH . S 4 HOH A 21 3020 3020 HOH HOH . S 4 HOH A 22 3021 3021 HOH HOH . S 4 HOH A 23 3022 3022 HOH HOH . S 4 HOH A 24 3023 3023 HOH HOH . S 4 HOH A 25 3024 3024 HOH HOH . S 4 HOH A 26 3025 3025 HOH HOH . S 4 HOH A 27 3026 3026 HOH HOH . S 4 HOH A 28 3027 3027 HOH HOH . S 4 HOH A 29 3028 3028 HOH HOH . S 4 HOH A 30 3029 3029 HOH HOH . S 4 HOH A 31 3030 3030 HOH HOH . S 4 HOH A 32 3031 3031 HOH HOH . S 4 HOH A 33 3032 3032 HOH HOH . S 4 HOH A 34 3033 3033 HOH HOH . S 4 HOH A 35 3034 3034 HOH HOH . S 4 HOH A 36 3035 3035 HOH HOH . S 4 HOH A 37 3036 3036 HOH HOH . S 4 HOH A 38 3037 3037 HOH HOH . S 4 HOH A 39 3038 3038 HOH HOH . S 4 HOH A 40 3039 3039 HOH HOH . S 4 HOH A 41 3040 3040 HOH HOH . S 4 HOH A 42 3041 3041 HOH HOH . S 4 HOH A 43 3042 3042 HOH HOH . S 4 HOH A 44 3043 3043 HOH HOH . S 4 HOH A 45 3044 3044 HOH HOH . S 4 HOH A 46 3045 3045 HOH HOH . S 4 HOH A 47 3046 3046 HOH HOH . S 4 HOH A 48 3047 3047 HOH HOH . S 4 HOH A 49 3048 3048 HOH HOH . S 4 HOH A 50 3049 3049 HOH HOH . S 4 HOH A 51 3050 3050 HOH HOH . S 4 HOH A 52 3051 3051 HOH HOH . S 4 HOH A 53 3052 3052 HOH HOH . S 4 HOH A 54 3053 3053 HOH HOH . S 4 HOH A 55 3054 3054 HOH HOH . S 4 HOH A 56 3055 3055 HOH HOH . S 4 HOH A 57 3056 3056 HOH HOH . S 4 HOH A 58 3057 3057 HOH HOH . S 4 HOH A 59 3058 3058 HOH HOH . S 4 HOH A 60 3059 3059 HOH HOH . S 4 HOH A 61 3060 3060 HOH HOH . S 4 HOH A 62 3061 3061 HOH HOH . S 4 HOH A 63 3062 3062 HOH HOH . S 4 HOH A 64 3063 3063 HOH HOH . S 4 HOH A 65 3064 3064 HOH HOH . S 4 HOH A 66 3065 3065 HOH HOH . S 4 HOH A 67 3066 3066 HOH HOH . S 4 HOH A 68 3067 3067 HOH HOH . S 4 HOH A 69 3068 3068 HOH HOH . S 4 HOH A 70 3069 3069 HOH HOH . S 4 HOH A 71 3070 3070 HOH HOH . S 4 HOH A 72 3071 3071 HOH HOH . S 4 HOH A 73 3072 3072 HOH HOH . S 4 HOH A 74 3073 3073 HOH HOH . S 4 HOH A 75 3074 3074 HOH HOH . S 4 HOH A 76 3075 3075 HOH HOH . S 4 HOH A 77 3076 3076 HOH HOH . S 4 HOH A 78 3077 3077 HOH HOH . S 4 HOH A 79 3078 3078 HOH HOH . S 4 HOH A 80 3079 3079 HOH HOH . S 4 HOH A 81 3080 3080 HOH HOH . S 4 HOH A 82 3081 3081 HOH HOH . S 4 HOH A 83 3082 3082 HOH HOH . S 4 HOH A 84 3083 3083 HOH HOH . S 4 HOH A 85 3084 3084 HOH HOH . S 4 HOH A 86 3085 3085 HOH HOH . S 4 HOH A 87 3086 3086 HOH HOH . S 4 HOH A 88 3087 3087 HOH HOH . S 4 HOH A 89 3088 3088 HOH HOH . S 4 HOH A 90 3089 3089 HOH HOH . S 4 HOH A 91 3090 3090 HOH HOH . S 4 HOH A 92 3091 3091 HOH HOH . S 4 HOH A 93 3092 3092 HOH HOH . S 4 HOH A 94 3093 3093 HOH HOH . S 4 HOH A 95 3094 3094 HOH HOH . S 4 HOH A 96 3095 3095 HOH HOH . S 4 HOH A 97 3096 3096 HOH HOH . S 4 HOH A 98 3097 3097 HOH HOH . S 4 HOH A 99 3098 3098 HOH HOH . S 4 HOH A 100 3099 3099 HOH HOH . S 4 HOH A 101 3100 3100 HOH HOH . S 4 HOH A 102 3101 3101 HOH HOH . S 4 HOH A 103 3102 3102 HOH HOH . S 4 HOH A 104 3103 3103 HOH HOH . S 4 HOH A 105 3104 3104 HOH HOH . S 4 HOH A 106 3105 3105 HOH HOH . S 4 HOH A 107 3106 3106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 29.19 8.464 8.656 1 44.05 ? O5' ADN 2014 A 1 HETATM 2 C C5' ADN . . . B 2 29.574 9.603 7.9 1 42.56 ? C5' ADN 2014 A 1 HETATM 3 C C4' ADN . . . B 2 29.242 10.859 8.662 1 42.24 ? C4' ADN 2014 A 1 HETATM 4 O O4' ADN . . . B 2 27.847 11.196 8.447 1 39.94 ? O4' ADN 2014 A 1 HETATM 5 C C3' ADN . . . B 2 29.377 10.761 10.177 1 42.6 ? C3' ADN 2014 A 1 HETATM 6 O O3' ADN . . . B 2 30.678 11.097 10.589 1 45.03 ? O3' ADN 2014 A 1 HETATM 7 C C2' ADN . . . B 2 28.393 11.78 10.682 1 41.72 ? C2' ADN 2014 A 1 HETATM 8 O O2' ADN . . . B 2 28.99 13.069 10.555 1 44.73 ? O2' ADN 2014 A 1 HETATM 9 C C1' ADN . . . B 2 27.282 11.693 9.641 1 38.2 ? C1' ADN 2014 A 1 HETATM 10 N N9 ADN . . . B 2 26.183 10.786 10.006 1 33.45 ? N9 ADN 2014 A 1 HETATM 11 C C8 ADN . . . B 2 26.055 9.438 9.733 1 33.04 ? C8 ADN 2014 A 1 HETATM 12 N N7 ADN . . . B 2 24.939 8.911 10.167 1 31.45 ? N7 ADN 2014 A 1 HETATM 13 C C5 ADN . . . B 2 24.27 10 10.743 1 29.37 ? C5 ADN 2014 A 1 HETATM 14 C C6 ADN . . . B 2 23.046 10.105 11.413 1 28.62 ? C6 ADN 2014 A 1 HETATM 15 N N6 ADN . . . B 2 22.19 9.094 11.583 1 28.61 ? N6 ADN 2014 A 1 HETATM 16 N N1 ADN . . . B 2 22.733 11.311 11.952 1 29.27 ? N1 ADN 2014 A 1 HETATM 17 C C2 ADN . . . B 2 23.578 12.337 11.793 1 30.11 ? C2 ADN 2014 A 1 HETATM 18 N N3 ADN . . . B 2 24.749 12.363 11.16 1 30.76 ? N3 ADN 2014 A 1 HETATM 19 C C4 ADN . . . B 2 25.035 11.147 10.647 1 30.76 ? C4 ADN 2014 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #