data_4CKJ
#
_model_server_result.job_id            Z1Z83pLS3qSSPSaPUz0OVQ 
_model_server_result.datetime_utc      '2024-11-06 00:00:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ckj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2014}' 
#
_entry.id    4CKJ 
#
_exptl.entry_id    4CKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.76 
_cell.angle_gamma         90 
_cell.entry_id            4CKJ 
_cell.length_a            73.19 
_cell.length_b            69.09 
_cell.length_c            78.64 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 73.19 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     4CKJ 
_atom_sites.fract_transf_matrix[1][1]    0.013663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002844 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012989 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADN A 1 2014 2014 ADN ADN . 
C 3 FMT A 1 2015 2015 FMT FMT . 
D 3 FMT A 1 2016 2016 FMT FMT . 
E 3 FMT A 1 2017 2017 FMT FMT . 
F 3 FMT A 1 2018 2018 FMT FMT . 
G 3 FMT A 1 2019 2019 FMT FMT . 
H 3 FMT A 1 2020 2020 FMT FMT . 
I 3 FMT A 1 2021 2021 FMT FMT . 
J 3 FMT A 1 2022 2022 FMT FMT . 
K 3 FMT A 1 2023 2023 FMT FMT . 
L 3 FMT A 1 2024 2024 FMT FMT . 
M 3 FMT A 1 2025 2025 FMT FMT . 
N 3 FMT A 1 2026 2026 FMT FMT . 
O 3 FMT A 1 2027 2027 FMT FMT . 
P 3 FMT A 1 2028 2028 FMT FMT . 
Q 3 FMT A 1 2029 2029 FMT FMT . 
R 3 FMT A 1 2030 2030 FMT FMT . 
S 4 HOH A 1 3000 3000 HOH HOH . 
S 4 HOH A 2 3001 3001 HOH HOH . 
S 4 HOH A 3 3002 3002 HOH HOH . 
S 4 HOH A 4 3003 3003 HOH HOH . 
S 4 HOH A 5 3004 3004 HOH HOH . 
S 4 HOH A 6 3005 3005 HOH HOH . 
S 4 HOH A 7 3006 3006 HOH HOH . 
S 4 HOH A 8 3007 3007 HOH HOH . 
S 4 HOH A 9 3008 3008 HOH HOH . 
S 4 HOH A 10 3009 3009 HOH HOH . 
S 4 HOH A 11 3010 3010 HOH HOH . 
S 4 HOH A 12 3011 3011 HOH HOH . 
S 4 HOH A 13 3012 3012 HOH HOH . 
S 4 HOH A 14 3013 3013 HOH HOH . 
S 4 HOH A 15 3014 3014 HOH HOH . 
S 4 HOH A 16 3015 3015 HOH HOH . 
S 4 HOH A 17 3016 3016 HOH HOH . 
S 4 HOH A 18 3017 3017 HOH HOH . 
S 4 HOH A 19 3018 3018 HOH HOH . 
S 4 HOH A 20 3019 3019 HOH HOH . 
S 4 HOH A 21 3020 3020 HOH HOH . 
S 4 HOH A 22 3021 3021 HOH HOH . 
S 4 HOH A 23 3022 3022 HOH HOH . 
S 4 HOH A 24 3023 3023 HOH HOH . 
S 4 HOH A 25 3024 3024 HOH HOH . 
S 4 HOH A 26 3025 3025 HOH HOH . 
S 4 HOH A 27 3026 3026 HOH HOH . 
S 4 HOH A 28 3027 3027 HOH HOH . 
S 4 HOH A 29 3028 3028 HOH HOH . 
S 4 HOH A 30 3029 3029 HOH HOH . 
S 4 HOH A 31 3030 3030 HOH HOH . 
S 4 HOH A 32 3031 3031 HOH HOH . 
S 4 HOH A 33 3032 3032 HOH HOH . 
S 4 HOH A 34 3033 3033 HOH HOH . 
S 4 HOH A 35 3034 3034 HOH HOH . 
S 4 HOH A 36 3035 3035 HOH HOH . 
S 4 HOH A 37 3036 3036 HOH HOH . 
S 4 HOH A 38 3037 3037 HOH HOH . 
S 4 HOH A 39 3038 3038 HOH HOH . 
S 4 HOH A 40 3039 3039 HOH HOH . 
S 4 HOH A 41 3040 3040 HOH HOH . 
S 4 HOH A 42 3041 3041 HOH HOH . 
S 4 HOH A 43 3042 3042 HOH HOH . 
S 4 HOH A 44 3043 3043 HOH HOH . 
S 4 HOH A 45 3044 3044 HOH HOH . 
S 4 HOH A 46 3045 3045 HOH HOH . 
S 4 HOH A 47 3046 3046 HOH HOH . 
S 4 HOH A 48 3047 3047 HOH HOH . 
S 4 HOH A 49 3048 3048 HOH HOH . 
S 4 HOH A 50 3049 3049 HOH HOH . 
S 4 HOH A 51 3050 3050 HOH HOH . 
S 4 HOH A 52 3051 3051 HOH HOH . 
S 4 HOH A 53 3052 3052 HOH HOH . 
S 4 HOH A 54 3053 3053 HOH HOH . 
S 4 HOH A 55 3054 3054 HOH HOH . 
S 4 HOH A 56 3055 3055 HOH HOH . 
S 4 HOH A 57 3056 3056 HOH HOH . 
S 4 HOH A 58 3057 3057 HOH HOH . 
S 4 HOH A 59 3058 3058 HOH HOH . 
S 4 HOH A 60 3059 3059 HOH HOH . 
S 4 HOH A 61 3060 3060 HOH HOH . 
S 4 HOH A 62 3061 3061 HOH HOH . 
S 4 HOH A 63 3062 3062 HOH HOH . 
S 4 HOH A 64 3063 3063 HOH HOH . 
S 4 HOH A 65 3064 3064 HOH HOH . 
S 4 HOH A 66 3065 3065 HOH HOH . 
S 4 HOH A 67 3066 3066 HOH HOH . 
S 4 HOH A 68 3067 3067 HOH HOH . 
S 4 HOH A 69 3068 3068 HOH HOH . 
S 4 HOH A 70 3069 3069 HOH HOH . 
S 4 HOH A 71 3070 3070 HOH HOH . 
S 4 HOH A 72 3071 3071 HOH HOH . 
S 4 HOH A 73 3072 3072 HOH HOH . 
S 4 HOH A 74 3073 3073 HOH HOH . 
S 4 HOH A 75 3074 3074 HOH HOH . 
S 4 HOH A 76 3075 3075 HOH HOH . 
S 4 HOH A 77 3076 3076 HOH HOH . 
S 4 HOH A 78 3077 3077 HOH HOH . 
S 4 HOH A 79 3078 3078 HOH HOH . 
S 4 HOH A 80 3079 3079 HOH HOH . 
S 4 HOH A 81 3080 3080 HOH HOH . 
S 4 HOH A 82 3081 3081 HOH HOH . 
S 4 HOH A 83 3082 3082 HOH HOH . 
S 4 HOH A 84 3083 3083 HOH HOH . 
S 4 HOH A 85 3084 3084 HOH HOH . 
S 4 HOH A 86 3085 3085 HOH HOH . 
S 4 HOH A 87 3086 3086 HOH HOH . 
S 4 HOH A 88 3087 3087 HOH HOH . 
S 4 HOH A 89 3088 3088 HOH HOH . 
S 4 HOH A 90 3089 3089 HOH HOH . 
S 4 HOH A 91 3090 3090 HOH HOH . 
S 4 HOH A 92 3091 3091 HOH HOH . 
S 4 HOH A 93 3092 3092 HOH HOH . 
S 4 HOH A 94 3093 3093 HOH HOH . 
S 4 HOH A 95 3094 3094 HOH HOH . 
S 4 HOH A 96 3095 3095 HOH HOH . 
S 4 HOH A 97 3096 3096 HOH HOH . 
S 4 HOH A 98 3097 3097 HOH HOH . 
S 4 HOH A 99 3098 3098 HOH HOH . 
S 4 HOH A 100 3099 3099 HOH HOH . 
S 4 HOH A 101 3100 3100 HOH HOH . 
S 4 HOH A 102 3101 3101 HOH HOH . 
S 4 HOH A 103 3102 3102 HOH HOH . 
S 4 HOH A 104 3103 3103 HOH HOH . 
S 4 HOH A 105 3104 3104 HOH HOH . 
S 4 HOH A 106 3105 3105 HOH HOH . 
S 4 HOH A 107 3106 3106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . B 2 29.19 8.464 8.656 1 44.05 ? O5' ADN 2014 A 1 
HETATM 2 C C5' ADN . . . B 2 29.574 9.603 7.9 1 42.56 ? C5' ADN 2014 A 1 
HETATM 3 C C4' ADN . . . B 2 29.242 10.859 8.662 1 42.24 ? C4' ADN 2014 A 1 
HETATM 4 O O4' ADN . . . B 2 27.847 11.196 8.447 1 39.94 ? O4' ADN 2014 A 1 
HETATM 5 C C3' ADN . . . B 2 29.377 10.761 10.177 1 42.6 ? C3' ADN 2014 A 1 
HETATM 6 O O3' ADN . . . B 2 30.678 11.097 10.589 1 45.03 ? O3' ADN 2014 A 1 
HETATM 7 C C2' ADN . . . B 2 28.393 11.78 10.682 1 41.72 ? C2' ADN 2014 A 1 
HETATM 8 O O2' ADN . . . B 2 28.99 13.069 10.555 1 44.73 ? O2' ADN 2014 A 1 
HETATM 9 C C1' ADN . . . B 2 27.282 11.693 9.641 1 38.2 ? C1' ADN 2014 A 1 
HETATM 10 N N9 ADN . . . B 2 26.183 10.786 10.006 1 33.45 ? N9 ADN 2014 A 1 
HETATM 11 C C8 ADN . . . B 2 26.055 9.438 9.733 1 33.04 ? C8 ADN 2014 A 1 
HETATM 12 N N7 ADN . . . B 2 24.939 8.911 10.167 1 31.45 ? N7 ADN 2014 A 1 
HETATM 13 C C5 ADN . . . B 2 24.27 10 10.743 1 29.37 ? C5 ADN 2014 A 1 
HETATM 14 C C6 ADN . . . B 2 23.046 10.105 11.413 1 28.62 ? C6 ADN 2014 A 1 
HETATM 15 N N6 ADN . . . B 2 22.19 9.094 11.583 1 28.61 ? N6 ADN 2014 A 1 
HETATM 16 N N1 ADN . . . B 2 22.733 11.311 11.952 1 29.27 ? N1 ADN 2014 A 1 
HETATM 17 C C2 ADN . . . B 2 23.578 12.337 11.793 1 30.11 ? C2 ADN 2014 A 1 
HETATM 18 N N3 ADN . . . B 2 24.749 12.363 11.16 1 30.76 ? N3 ADN 2014 A 1 
HETATM 19 C C4 ADN . . . B 2 25.035 11.147 10.647 1 30.76 ? C4 ADN 2014 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#