data_4CKR
#
_model_server_result.job_id            RNX50WLLcQlOvXtzNLW_Qg 
_model_server_result.datetime_utc      '2024-11-22 09:49:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ckr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1000}' 
#
_entry.id    4CKR 
#
_exptl.entry_id    4CKR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.587 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(4-ethylpiperazin-1-yl)methyl]-n-{4-methyl-3-[(2-oxo-2,3-dihydro-1h-indol-5-yl)oxy]phenyl}-3-(trifluoromethyl)benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CKR 
_cell.length_a            59.308 
_cell.length_b            59.308 
_cell.length_c            178.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CKR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H31 F3 N4 O3' 
_chem_comp.formula_weight    552.587 
_chem_comp.id                DI1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(4-ethylpiperazin-1-yl)methyl]-n-{4-methyl-3-[(2-oxo-2,3-dihydro-1h-indol-5-yl)oxy]phenyl}-3-(trifluoromethyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 DI1 sing 83 n n 
C02 N03 DI1 sing 84 n n 
N03 C04 DI1 sing 85 n n 
N03 C08 DI1 sing 86 n n 
C04 C05 DI1 sing 87 n n 
C05 N06 DI1 sing 88 n n 
N06 C07 DI1 sing 89 n n 
N06 C09 DI1 sing 90 n n 
C07 C08 DI1 sing 91 n n 
C09 C10 DI1 sing 92 n n 
C10 C11 DI1 sing 93 n y 
C10 C15 DI1 doub 94 n y 
C11 C12 DI1 doub 95 n y 
C12 C13 DI1 sing 96 n y 
C13 C14 DI1 doub 97 n y 
C13 C20 DI1 sing 98 n n 
C14 C15 DI1 sing 99 n y 
C15 C16 DI1 sing 100 n n 
C16 F17 DI1 sing 101 n n 
C16 F18 DI1 sing 102 n n 
C16 F19 DI1 sing 103 n n 
C20 N21 DI1 sing 104 n n 
C20 O40 DI1 doub 105 n n 
N21 C22 DI1 sing 106 n n 
C22 C23 DI1 sing 107 n y 
C22 C28 DI1 doub 108 n y 
C23 C24 DI1 doub 109 n y 
C24 C25 DI1 sing 110 n y 
C25 C26 DI1 sing 111 n n 
C25 C27 DI1 doub 112 n y 
C27 C28 DI1 sing 113 n y 
C27 O29 DI1 sing 114 n n 
O29 C30 DI1 sing 115 n n 
C30 C31 DI1 sing 116 n y 
C30 C39 DI1 doub 117 n y 
C31 C32 DI1 doub 118 n y 
C32 C33 DI1 sing 119 n y 
C33 C34 DI1 doub 120 n y 
C33 N37 DI1 sing 121 n n 
C34 C35 DI1 sing 122 n n 
C34 C39 DI1 sing 123 n y 
C35 C36 DI1 sing 124 n n 
C36 N37 DI1 sing 125 n n 
C36 O38 DI1 doub 126 n n 
C01 H011 DI1 sing 127 n n 
C01 H012 DI1 sing 128 n n 
C01 H013 DI1 sing 129 n n 
C02 H021 DI1 sing 130 n n 
C02 H022 DI1 sing 131 n n 
C04 H041 DI1 sing 132 n n 
C04 H042 DI1 sing 133 n n 
C08 H081 DI1 sing 134 n n 
C08 H082 DI1 sing 135 n n 
C05 H051 DI1 sing 136 n n 
C05 H052 DI1 sing 137 n n 
C07 H071 DI1 sing 138 n n 
C07 H072 DI1 sing 139 n n 
C09 H091 DI1 sing 140 n n 
C09 H092 DI1 sing 141 n n 
C11 H11 DI1 sing 142 n n 
C12 H12 DI1 sing 143 n n 
C14 H14 DI1 sing 144 n n 
N21 H21 DI1 sing 145 n n 
C23 H23 DI1 sing 146 n n 
C28 H28 DI1 sing 147 n n 
C24 H24 DI1 sing 148 n n 
C26 H261 DI1 sing 149 n n 
C26 H262 DI1 sing 150 n n 
C26 H263 DI1 sing 151 n n 
C31 H31 DI1 sing 152 n n 
C39 H39 DI1 sing 153 n n 
C32 H32 DI1 sing 154 n n 
N37 H37 DI1 sing 155 n n 
C35 H351 DI1 sing 156 n n 
C35 H352 DI1 sing 157 n n 
#
_atom_sites.entry_id                     4CKR 
_atom_sites.fract_transf_matrix[1][1]    0.016861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016861 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005603 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DI1 A 1 1000 1000 DI1 DI1 . 
C 3 EDO A 1 1001 1001 EDO EDO . 
D 3 EDO A 1 1002 1002 EDO EDO . 
E 3 EDO A 1 1003 1003 EDO EDO . 
F 3 EDO A 1 1004 1004 EDO EDO . 
G 3 EDO A 1 1005 1005 EDO EDO . 
H 4 HOH A 1 2001 2001 HOH HOH . 
H 4 HOH A 2 2002 2002 HOH HOH . 
H 4 HOH A 3 2003 2003 HOH HOH . 
H 4 HOH A 4 2004 2004 HOH HOH . 
H 4 HOH A 5 2005 2005 HOH HOH . 
H 4 HOH A 6 2006 2006 HOH HOH . 
H 4 HOH A 7 2007 2007 HOH HOH . 
H 4 HOH A 8 2008 2008 HOH HOH . 
H 4 HOH A 9 2009 2009 HOH HOH . 
H 4 HOH A 10 2010 2010 HOH HOH . 
H 4 HOH A 11 2011 2011 HOH HOH . 
H 4 HOH A 12 2012 2012 HOH HOH . 
H 4 HOH A 13 2013 2013 HOH HOH . 
H 4 HOH A 14 2014 2014 HOH HOH . 
H 4 HOH A 15 2015 2015 HOH HOH . 
H 4 HOH A 16 2016 2016 HOH HOH . 
H 4 HOH A 17 2017 2017 HOH HOH . 
H 4 HOH A 18 2018 2018 HOH HOH . 
H 4 HOH A 19 2019 2019 HOH HOH . 
H 4 HOH A 20 2020 2020 HOH HOH . 
H 4 HOH A 21 2021 2021 HOH HOH . 
H 4 HOH A 22 2022 2022 HOH HOH . 
H 4 HOH A 23 2023 2023 HOH HOH . 
H 4 HOH A 24 2024 2024 HOH HOH . 
H 4 HOH A 25 2025 2025 HOH HOH . 
H 4 HOH A 26 2026 2026 HOH HOH . 
H 4 HOH A 27 2027 2027 HOH HOH . 
H 4 HOH A 28 2028 2028 HOH HOH . 
H 4 HOH A 29 2029 2029 HOH HOH . 
H 4 HOH A 30 2030 2030 HOH HOH . 
H 4 HOH A 31 2031 2031 HOH HOH . 
H 4 HOH A 32 2032 2032 HOH HOH . 
H 4 HOH A 33 2033 2033 HOH HOH . 
H 4 HOH A 34 2034 2034 HOH HOH . 
H 4 HOH A 35 2035 2035 HOH HOH . 
H 4 HOH A 36 2036 2036 HOH HOH . 
H 4 HOH A 37 2037 2037 HOH HOH . 
H 4 HOH A 38 2038 2038 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 DI1 . . . B 2 -9.126 38.171 11.886 1 38.92 ? C01 DI1 1000 A 1 
HETATM 2 C C02 DI1 . . . B 2 -7.791 37.651 11.529 1 36.77 ? C02 DI1 1000 A 1 
HETATM 3 N N03 DI1 . . . B 2 -7.117 36.874 12.565 1 33.96 ? N03 DI1 1000 A 1 
HETATM 4 C C04 DI1 . . . B 2 -6.843 37.709 13.739 1 30.37 ? C04 DI1 1000 A 1 
HETATM 5 C C05 DI1 . . . B 2 -6.056 36.931 14.779 1 31.38 ? C05 DI1 1000 A 1 
HETATM 6 N N06 DI1 . . . B 2 -4.814 36.409 14.197 1 31.7 ? N06 DI1 1000 A 1 
HETATM 7 C C07 DI1 . . . B 2 -5.117 35.569 13.043 1 31.73 ? C07 DI1 1000 A 1 
HETATM 8 C C08 DI1 . . . B 2 -5.859 36.358 12.013 1 32.34 ? C08 DI1 1000 A 1 
HETATM 9 C C09 DI1 . . . B 2 -4.016 35.685 15.185 1 31.99 ? C09 DI1 1000 A 1 
HETATM 10 C C10 DI1 . . . B 2 -2.617 35.411 14.695 1 31.19 ? C10 DI1 1000 A 1 
HETATM 11 C C11 DI1 . . . B 2 -1.922 36.38 13.987 1 31.89 ? C11 DI1 1000 A 1 
HETATM 12 C C12 DI1 . . . B 2 -0.667 36.122 13.477 1 34.49 ? C12 DI1 1000 A 1 
HETATM 13 C C13 DI1 . . . B 2 -0.085 34.875 13.648 1 33.4 ? C13 DI1 1000 A 1 
HETATM 14 C C14 DI1 . . . B 2 -0.765 33.906 14.368 1 32.4 ? C14 DI1 1000 A 1 
HETATM 15 C C15 DI1 . . . B 2 -2.023 34.165 14.895 1 31.14 ? C15 DI1 1000 A 1 
HETATM 16 C C16 DI1 . . . B 2 -2.712 33.071 15.634 1 34.07 ? C16 DI1 1000 A 1 
HETATM 17 F F17 DI1 . . . B 2 -3.081 33.425 16.78 1 35.34 ? F17 DI1 1000 A 1 
HETATM 18 F F18 DI1 . . . B 2 -1.987 32.025 15.783 1 34.55 ? F18 DI1 1000 A 1 
HETATM 19 F F19 DI1 . . . B 2 -3.746 32.669 15.051 1 32.66 ? F19 DI1 1000 A 1 
HETATM 20 C C20 DI1 . . . B 2 1.287 34.501 13.21 1 35.22 ? C20 DI1 1000 A 1 
HETATM 21 N N21 DI1 . . . B 2 2.095 35.522 12.851 1 33.72 ? N21 DI1 1000 A 1 
HETATM 22 C C22 DI1 . . . B 2 3.469 35.44 12.534 1 30.76 ? C22 DI1 1000 A 1 
HETATM 23 C C23 DI1 . . . B 2 4.422 36.191 13.198 1 30.63 ? C23 DI1 1000 A 1 
HETATM 24 C C24 DI1 . . . B 2 5.755 36.054 12.872 1 31.32 ? C24 DI1 1000 A 1 
HETATM 25 C C25 DI1 . . . B 2 6.175 35.155 11.905 1 30.34 ? C25 DI1 1000 A 1 
HETATM 26 C C26 DI1 . . . B 2 7.636 34.976 11.612 1 31.24 ? C26 DI1 1000 A 1 
HETATM 27 C C27 DI1 . . . B 2 5.196 34.427 11.227 1 29.96 ? C27 DI1 1000 A 1 
HETATM 28 C C28 DI1 . . . B 2 3.86 34.576 11.527 1 29.62 ? C28 DI1 1000 A 1 
HETATM 29 O O29 DI1 . . . B 2 5.336 33.34 10.431 1 30.38 ? O29 DI1 1000 A 1 
HETATM 30 C C30 DI1 . . . B 2 6.222 32.304 10.438 1 34.16 ? C30 DI1 1000 A 1 
HETATM 31 C C31 DI1 . . . B 2 6.572 31.776 9.214 1 33.93 ? C31 DI1 1000 A 1 
HETATM 32 C C32 DI1 . . . B 2 7.198 30.548 9.146 1 36.25 ? C32 DI1 1000 A 1 
HETATM 33 C C33 DI1 . . . B 2 7.494 29.881 10.315 1 33.51 ? C33 DI1 1000 A 1 
HETATM 34 C C34 DI1 . . . B 2 7.16 30.418 11.552 1 31.98 ? C34 DI1 1000 A 1 
HETATM 35 C C35 DI1 . . . B 2 7.633 29.468 12.606 1 32.48 ? C35 DI1 1000 A 1 
HETATM 36 C C36 DI1 . . . B 2 8.248 28.351 11.813 1 33.97 ? C36 DI1 1000 A 1 
HETATM 37 N N37 DI1 . . . B 2 8.141 28.674 10.498 1 35.18 ? N37 DI1 1000 A 1 
HETATM 38 O O38 DI1 . . . B 2 8.745 27.33 12.244 1 41.19 ? O38 DI1 1000 A 1 
HETATM 39 C C39 DI1 . . . B 2 6.52 31.642 11.619 1 33.39 ? C39 DI1 1000 A 1 
HETATM 40 O O40 DI1 . . . B 2 1.596 33.327 13.094 1 34.16 ? O40 DI1 1000 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           40 
#