data_4CKV # _model_server_result.job_id GeNUu1BW93VtlJ3eeRyQhw _model_server_result.datetime_utc '2024-11-09 02:30:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ckv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1227}' # _entry.id 4CKV # _exptl.entry_id 4CKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CKV _cell.length_a 95.73 _cell.length_b 102.39 _cell.length_c 27.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 13.735 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 X CYS 158 1_555 A SG CYS 76 X CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc1 A NE2 HIS 16 X HIS 147 1_555 B ZN ZN . X ZN 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A NE2 HIS 16 X HIS 147 3_555 B ZN ZN . X ZN 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A NE2 HIS 92 X HIS 223 1_555 B ZN ZN . X ZN 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc4 A NE2 HIS 92 X HIS 223 3_555 B ZN ZN . X ZN 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4CKV _atom_sites.fract_transf_matrix[1][1] 0.010446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN X 1 1226 1226 ZN ZN . C 3 EDO X 1 1227 1227 EDO EDO . D 3 EDO X 1 1228 1228 EDO EDO . E 3 EDO X 1 1229 1229 EDO EDO . F 3 EDO X 1 1230 1230 EDO EDO . G 4 HOH X 1 2001 2001 HOH HOH . G 4 HOH X 2 2002 2002 HOH HOH . G 4 HOH X 3 2003 2003 HOH HOH . G 4 HOH X 4 2004 2004 HOH HOH . G 4 HOH X 5 2005 2005 HOH HOH . G 4 HOH X 6 2006 2006 HOH HOH . G 4 HOH X 7 2007 2007 HOH HOH . G 4 HOH X 8 2008 2008 HOH HOH . G 4 HOH X 9 2009 2009 HOH HOH . G 4 HOH X 10 2010 2010 HOH HOH . G 4 HOH X 11 2011 2011 HOH HOH . G 4 HOH X 12 2012 2012 HOH HOH . G 4 HOH X 13 2013 2013 HOH HOH . G 4 HOH X 14 2014 2014 HOH HOH . G 4 HOH X 15 2015 2015 HOH HOH . G 4 HOH X 16 2016 2016 HOH HOH . G 4 HOH X 17 2017 2017 HOH HOH . G 4 HOH X 18 2018 2018 HOH HOH . G 4 HOH X 19 2019 2019 HOH HOH . G 4 HOH X 20 2020 2020 HOH HOH . G 4 HOH X 21 2021 2021 HOH HOH . G 4 HOH X 22 2022 2022 HOH HOH . G 4 HOH X 23 2023 2023 HOH HOH . G 4 HOH X 24 2024 2024 HOH HOH . G 4 HOH X 25 2025 2025 HOH HOH . G 4 HOH X 26 2026 2026 HOH HOH . G 4 HOH X 27 2027 2027 HOH HOH . G 4 HOH X 28 2028 2028 HOH HOH . G 4 HOH X 29 2029 2029 HOH HOH . G 4 HOH X 30 2030 2030 HOH HOH . G 4 HOH X 31 2031 2031 HOH HOH . G 4 HOH X 32 2032 2032 HOH HOH . G 4 HOH X 33 2033 2033 HOH HOH . G 4 HOH X 34 2034 2034 HOH HOH . G 4 HOH X 35 2035 2035 HOH HOH . G 4 HOH X 36 2036 2036 HOH HOH . G 4 HOH X 37 2037 2037 HOH HOH . G 4 HOH X 38 2038 2038 HOH HOH . G 4 HOH X 39 2039 2039 HOH HOH . G 4 HOH X 40 2040 2040 HOH HOH . G 4 HOH X 41 2041 2041 HOH HOH . G 4 HOH X 42 2042 2042 HOH HOH . G 4 HOH X 43 2043 2043 HOH HOH . G 4 HOH X 44 2044 2044 HOH HOH . G 4 HOH X 45 2045 2045 HOH HOH . G 4 HOH X 46 2046 2046 HOH HOH . G 4 HOH X 47 2047 2047 HOH HOH . G 4 HOH X 48 2048 2048 HOH HOH . G 4 HOH X 49 2049 2049 HOH HOH . G 4 HOH X 50 2050 2050 HOH HOH . G 4 HOH X 51 2051 2051 HOH HOH . G 4 HOH X 52 2052 2052 HOH HOH . G 4 HOH X 53 2053 2053 HOH HOH . G 4 HOH X 54 2054 2054 HOH HOH . G 4 HOH X 55 2055 2055 HOH HOH . G 4 HOH X 56 2056 2056 HOH HOH . G 4 HOH X 57 2057 2057 HOH HOH . G 4 HOH X 58 2058 2058 HOH HOH . G 4 HOH X 59 2059 2059 HOH HOH . G 4 HOH X 60 2060 2060 HOH HOH . G 4 HOH X 61 2061 2061 HOH HOH . G 4 HOH X 62 2062 2062 HOH HOH . G 4 HOH X 63 2063 2063 HOH HOH . G 4 HOH X 64 2064 2064 HOH HOH . G 4 HOH X 65 2065 2065 HOH HOH . G 4 HOH X 66 2066 2066 HOH HOH . G 4 HOH X 67 2067 2067 HOH HOH . G 4 HOH X 68 2068 2068 HOH HOH . G 4 HOH X 69 2069 2069 HOH HOH . G 4 HOH X 70 2070 2070 HOH HOH . G 4 HOH X 71 2071 2071 HOH HOH . G 4 HOH X 72 2072 2072 HOH HOH . G 4 HOH X 73 2073 2073 HOH HOH . G 4 HOH X 74 2074 2074 HOH HOH . G 4 HOH X 75 2075 2075 HOH HOH . G 4 HOH X 76 2076 2076 HOH HOH . G 4 HOH X 77 2077 2077 HOH HOH . G 4 HOH X 78 2078 2078 HOH HOH . G 4 HOH X 79 2079 2079 HOH HOH . G 4 HOH X 80 2080 2080 HOH HOH . G 4 HOH X 81 2081 2081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -24.279 -18.065 2.145 1 40.17 ? C1 EDO 1227 X 1 HETATM 2 O O1 EDO . . . C 3 -24.965 -19.25 1.732 1 45.75 ? O1 EDO 1227 X 1 HETATM 3 C C2 EDO . . . C 3 -23.617 -18.34 3.49 1 33.87 ? C2 EDO 1227 X 1 HETATM 4 O O2 EDO . . . C 3 -22.748 -17.256 3.831 1 27.58 ? O2 EDO 1227 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #