data_4CLT # _model_server_result.job_id IxyHpmBgo_JaUd52Po9YWA _model_server_result.datetime_utc '2024-11-24 15:48:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4clt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1472}' # _entry.id 4CLT # _exptl.entry_id 4CLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CLT _cell.length_a 100.97 _cell.length_b 100.97 _cell.length_c 97.21 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 50.485 87.442585 0 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 100.97 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 252 A ALA 252 1_555 A N CME 253 A CME 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CME 253 A CME 253 1_555 A N THR 254 A THR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 A OD1 ASP 47 A ASP 47 1_555 B MG MG . A MG 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 A OD1 ASP 99 A ASP 99 1_555 B MG MG . A MG 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 B MG MG . A MG 1471 1_555 E O4 POP . A POP 1474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 B MG MG . A MG 1471 1_555 E O3 POP . A POP 1474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 91 n n P O2P CMP sing 92 n n P O5' CMP sing 93 n n P O3' CMP sing 94 n n O2P HOP2 CMP sing 95 n n O5' C5' CMP sing 96 n n C5' C4' CMP sing 97 n n C5' "H5'1" CMP sing 98 n n C5' "H5'2" CMP sing 99 n n C4' O4' CMP sing 100 n n C4' C3' CMP sing 101 n n C4' H4' CMP sing 102 n n O4' C1' CMP sing 103 n n C3' O3' CMP sing 104 n n C3' C2' CMP sing 105 n n C3' H3' CMP sing 106 n n C2' O2' CMP sing 107 n n C2' C1' CMP sing 108 n n C2' H2' CMP sing 109 n n O2' HO2' CMP sing 110 n n C1' N9 CMP sing 111 n n C1' H1' CMP sing 112 n n N9 C8 CMP sing 113 n y N9 C4 CMP sing 114 n y C8 N7 CMP doub 115 n y C8 H8 CMP sing 116 n n N7 C5 CMP sing 117 n y C5 C6 CMP sing 118 n y C5 C4 CMP doub 119 n y C6 N6 CMP sing 120 n n C6 N1 CMP doub 121 n y N6 HN61 CMP sing 122 n n N6 HN62 CMP sing 123 n n N1 C2 CMP sing 124 n y C2 N3 CMP doub 125 n y C2 H2 CMP sing 126 n n N3 C4 CMP sing 127 n y # _atom_sites.entry_id 4CLT _atom_sites.fract_transf_matrix[1][1] 0.009904 _atom_sites.fract_transf_matrix[1][2] 0.005718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1471 1471 MG MG . C 3 CMP A 1 1472 1472 CMP CMP . D 3 CMP A 1 1473 1473 CMP CMP . E 4 POP A 1 1474 1474 POP POP . F 5 CL A 1 1475 1475 CL CL . G 6 EDO A 1 1476 1476 EDO EDO . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . H 7 HOH A 13 2013 2013 HOH HOH . H 7 HOH A 14 2014 2014 HOH HOH . H 7 HOH A 15 2015 2015 HOH HOH . H 7 HOH A 16 2016 2016 HOH HOH . H 7 HOH A 17 2017 2017 HOH HOH . H 7 HOH A 18 2018 2018 HOH HOH . H 7 HOH A 19 2019 2019 HOH HOH . H 7 HOH A 20 2020 2020 HOH HOH . H 7 HOH A 21 2021 2021 HOH HOH . H 7 HOH A 22 2022 2022 HOH HOH . H 7 HOH A 23 2023 2023 HOH HOH . H 7 HOH A 24 2024 2024 HOH HOH . H 7 HOH A 25 2025 2025 HOH HOH . H 7 HOH A 26 2026 2026 HOH HOH . H 7 HOH A 27 2027 2027 HOH HOH . H 7 HOH A 28 2028 2028 HOH HOH . H 7 HOH A 29 2029 2029 HOH HOH . H 7 HOH A 30 2030 2030 HOH HOH . H 7 HOH A 31 2031 2031 HOH HOH . H 7 HOH A 32 2032 2032 HOH HOH . H 7 HOH A 33 2033 2033 HOH HOH . H 7 HOH A 34 2034 2034 HOH HOH . H 7 HOH A 35 2035 2035 HOH HOH . H 7 HOH A 36 2036 2036 HOH HOH . H 7 HOH A 37 2037 2037 HOH HOH . H 7 HOH A 38 2038 2038 HOH HOH . H 7 HOH A 39 2039 2039 HOH HOH . H 7 HOH A 40 2040 2040 HOH HOH . H 7 HOH A 41 2041 2041 HOH HOH . H 7 HOH A 42 2042 2042 HOH HOH . H 7 HOH A 43 2043 2043 HOH HOH . H 7 HOH A 44 2044 2044 HOH HOH . H 7 HOH A 45 2045 2045 HOH HOH . H 7 HOH A 46 2046 2046 HOH HOH . H 7 HOH A 47 2047 2047 HOH HOH . H 7 HOH A 48 2048 2048 HOH HOH . H 7 HOH A 49 2049 2049 HOH HOH . H 7 HOH A 50 2050 2050 HOH HOH . H 7 HOH A 51 2051 2051 HOH HOH . H 7 HOH A 52 2052 2052 HOH HOH . H 7 HOH A 53 2053 2053 HOH HOH . H 7 HOH A 54 2054 2054 HOH HOH . H 7 HOH A 55 2055 2055 HOH HOH . H 7 HOH A 56 2056 2056 HOH HOH . H 7 HOH A 57 2057 2057 HOH HOH . H 7 HOH A 58 2058 2058 HOH HOH . H 7 HOH A 59 2059 2059 HOH HOH . H 7 HOH A 60 2060 2060 HOH HOH . H 7 HOH A 61 2061 2061 HOH HOH . H 7 HOH A 62 2062 2062 HOH HOH . H 7 HOH A 63 2063 2063 HOH HOH . H 7 HOH A 64 2064 2064 HOH HOH . H 7 HOH A 65 2065 2065 HOH HOH . H 7 HOH A 66 2066 2066 HOH HOH . H 7 HOH A 67 2067 2067 HOH HOH . H 7 HOH A 68 2068 2068 HOH HOH . H 7 HOH A 69 2069 2069 HOH HOH . H 7 HOH A 70 2070 2070 HOH HOH . H 7 HOH A 71 2071 2071 HOH HOH . H 7 HOH A 72 2072 2072 HOH HOH . H 7 HOH A 73 2073 2073 HOH HOH . H 7 HOH A 74 2074 2074 HOH HOH . H 7 HOH A 75 2075 2075 HOH HOH . H 7 HOH A 76 2076 2076 HOH HOH . H 7 HOH A 77 2077 2077 HOH HOH . H 7 HOH A 78 2078 2078 HOH HOH . H 7 HOH A 79 2079 2079 HOH HOH . H 7 HOH A 80 2080 2080 HOH HOH . H 7 HOH A 81 2081 2081 HOH HOH . H 7 HOH A 82 2082 2082 HOH HOH . H 7 HOH A 83 2083 2083 HOH HOH . H 7 HOH A 84 2084 2084 HOH HOH . H 7 HOH A 85 2085 2085 HOH HOH . H 7 HOH A 86 2086 2086 HOH HOH . H 7 HOH A 87 2087 2087 HOH HOH . H 7 HOH A 88 2088 2088 HOH HOH . H 7 HOH A 89 2089 2089 HOH HOH . H 7 HOH A 90 2090 2090 HOH HOH . H 7 HOH A 91 2091 2091 HOH HOH . H 7 HOH A 92 2092 2092 HOH HOH . H 7 HOH A 93 2093 2093 HOH HOH . H 7 HOH A 94 2094 2094 HOH HOH . H 7 HOH A 95 2095 2095 HOH HOH . H 7 HOH A 96 2096 2096 HOH HOH . H 7 HOH A 97 2097 2097 HOH HOH . H 7 HOH A 98 2098 2098 HOH HOH . H 7 HOH A 99 2099 2099 HOH HOH . H 7 HOH A 100 2100 2100 HOH HOH . H 7 HOH A 101 2101 2101 HOH HOH . H 7 HOH A 102 2102 2102 HOH HOH . H 7 HOH A 103 2103 2103 HOH HOH . H 7 HOH A 104 2104 2104 HOH HOH . H 7 HOH A 105 2105 2105 HOH HOH . H 7 HOH A 106 2106 2106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 3 0.095 37.883 21.677 1 44.75 ? P CMP 1472 A 1 HETATM 2 O O1P CMP . . . C 3 -0.931 38.954 21.387 1 49.79 ? O1P CMP 1472 A 1 HETATM 3 O O2P CMP . . . C 3 1.404 37.982 20.949 1 47.39 ? O2P CMP 1472 A 1 HETATM 4 O O5' CMP . . . C 3 -0.651 36.465 21.336 1 42.69 ? O5' CMP 1472 A 1 HETATM 5 C C5' CMP . . . C 3 -0.209 35.209 21.861 1 41.44 ? C5' CMP 1472 A 1 HETATM 6 C C4' CMP . . . C 3 0.207 35.502 23.29 1 39.56 ? C4' CMP 1472 A 1 HETATM 7 O O4' CMP . . . C 3 0.815 34.413 23.941 1 34.9 ? O4' CMP 1472 A 1 HETATM 8 C C3' CMP . . . C 3 1.221 36.628 23.518 1 41.24 ? C3' CMP 1472 A 1 HETATM 9 O O3' CMP . . . C 3 0.677 37.91 23.163 1 42.76 ? O3' CMP 1472 A 1 HETATM 10 C C2' CMP . . . C 3 1.47 36.48 24.99 1 39.51 ? C2' CMP 1472 A 1 HETATM 11 O O2' CMP . . . C 3 0.436 37.186 25.682 1 41.82 ? O2' CMP 1472 A 1 HETATM 12 C C1' CMP . . . C 3 1.337 34.964 25.158 1 40.67 ? C1' CMP 1472 A 1 HETATM 13 N N9 CMP . . . C 3 2.637 34.306 25.361 1 38.25 ? N9 CMP 1472 A 1 HETATM 14 C C8 CMP . . . C 3 3.848 34.675 24.863 1 39.76 ? C8 CMP 1472 A 1 HETATM 15 N N7 CMP . . . C 3 4.817 33.804 25.247 1 35.66 ? N7 CMP 1472 A 1 HETATM 16 C C5 CMP . . . C 3 4.216 32.852 25.987 1 38.23 ? C5 CMP 1472 A 1 HETATM 17 C C6 CMP . . . C 3 4.622 31.662 26.737 1 39.86 ? C6 CMP 1472 A 1 HETATM 18 N N6 CMP . . . C 3 5.899 31.225 26.777 1 39.61 ? N6 CMP 1472 A 1 HETATM 19 N N1 CMP . . . C 3 3.661 30.975 27.39 1 45.6 ? N1 CMP 1472 A 1 HETATM 20 C C2 CMP . . . C 3 2.374 31.363 27.42 1 46.02 ? C2 CMP 1472 A 1 HETATM 21 N N3 CMP . . . C 3 1.92 32.446 26.779 1 40.69 ? N3 CMP 1472 A 1 HETATM 22 C C4 CMP . . . C 3 2.78 33.199 26.056 1 42.1 ? C4 CMP 1472 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #