data_4CLV # _model_server_result.job_id eCiD8-2mjQs0x_iISOUfow _model_server_result.datetime_utc '2024-11-05 01:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4clv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1154}' # _entry.id 4CLV # _exptl.entry_id 4CLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CLV _cell.length_a 53.8 _cell.length_b 53.8 _cell.length_c 300.04 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 A HIS 32 1_555 F ZN ZN . A ZN 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A NE2 HIS 38 A HIS 38 1_555 C ZN ZN . A ZN 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A NE2 HIS 42 A HIS 42 1_555 D ZN ZN . A ZN 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 A NE2 HIS 46 A HIS 46 1_555 D ZN ZN . A ZN 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 A OD2 ASP 47 A ASP 47 1_555 H ZN ZN . A ZN 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc6 A OE2 GLU 60 A GLU 60 1_555 D ZN ZN . A ZN 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 A OE1 GLU 63 A GLU 63 1_555 C ZN ZN . A ZN 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc8 A OE2 GLU 104 A GLU 104 6_445 N ZN ZN . B ZN 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc9 A NE2 HIS 119 A HIS 119 1_555 C ZN ZN . A ZN 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc10 B NE2 HIS 38 B HIS 38 1_555 L ZN ZN . B ZN 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B NE2 HIS 42 B HIS 42 1_555 M ZN ZN . B ZN 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc12 B NE2 HIS 46 B HIS 46 1_555 M ZN ZN . B ZN 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc13 B OE1 GLU 57 B GLU 57 1_555 O ZN ZN . B ZN 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc14 B OE2 GLU 60 B GLU 60 1_555 M ZN ZN . B ZN 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc15 B OE1 GLU 63 B GLU 63 1_555 L ZN ZN . B ZN 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc16 B NE2 HIS 119 B HIS 119 1_555 L ZN ZN . B ZN 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C5 H15 N O4 P 1' _chem_comp.formula_weight 184.151 _chem_comp.id PC _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 PC doub 222 n n P1 O3 PC sing 223 n n P1 O4 PC sing 224 n n P1 O2 PC sing 225 n n O3 HO3 PC sing 226 n n O4 HO4 PC sing 227 n n O2 C1 PC sing 228 n n C1 C2 PC sing 229 n n C1 H11 PC sing 230 n n C1 H12 PC sing 231 n n C2 N1 PC sing 232 n n C2 H21 PC sing 233 n n C2 H22 PC sing 234 n n N1 C3 PC sing 235 n n N1 C4 PC sing 236 n n N1 C5 PC sing 237 n n C3 H31 PC sing 238 n n C3 H32 PC sing 239 n n C3 H33 PC sing 240 n n C4 H41 PC sing 241 n n C4 H42 PC sing 242 n n C4 H43 PC sing 243 n n C5 H51 PC sing 244 n n C5 H52 PC sing 245 n n C5 H53 PC sing 246 n n # _atom_sites.entry_id 4CLV _atom_sites.fract_transf_matrix[1][1] 0.018587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1146 1146 ZN ZN . D 2 ZN A 1 1147 1147 ZN ZN . E 2 ZN A 1 1148 1148 ZN ZN . F 2 ZN A 1 1149 1149 ZN ZN . G 2 ZN A 1 1150 1150 ZN ZN . H 2 ZN A 1 1151 1151 ZN ZN . I 3 PO4 A 1 1152 1152 PO4 PO4 . J 3 PO4 A 1 1153 1153 PO4 PO4 . K 4 PC A 1 1154 1154 PC PC . L 2 ZN B 1 1146 1146 ZN ZN . M 2 ZN B 1 1147 1147 ZN ZN . N 2 ZN B 1 1148 1148 ZN ZN . O 2 ZN B 1 1149 1149 ZN ZN . P 3 PO4 B 1 1150 1150 PO4 PO4 . Q 3 PO4 B 1 1151 1151 PO4 PO4 . R 4 PC B 1 1152 1152 PC PC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 PC . . . K 4 -15.112 -21.988 16.882 1 263.59 ? P1 PC 1154 A 1 HETATM 2 O O1 PC . . . K 4 -14.792 -22.522 15.483 1 263.69 ? O1 PC 1154 A 1 HETATM 3 O O3 PC . . . K 4 -16.416 -21.257 16.941 1 263.74 ? O3 PC 1154 A 1 HETATM 4 O O4 PC . . . K 4 -13.924 -21.15 17.373 1 263.59 ? O4 PC 1154 A 1 HETATM 5 O O2 PC . . . K 4 -15.184 -23.295 17.851 1 262.77 ? O2 PC 1154 A 1 HETATM 6 C C1 PC . . . K 4 -15.486 -23.17 19.263 1 261.71 ? C1 PC 1154 A 1 HETATM 7 C C2 PC . . . K 4 -14.29 -23.687 20.038 1 260.58 ? C2 PC 1154 A 1 HETATM 8 N N1 PC . . . K 4 -13.75 -22.795 21.149 1 259.58 ? N1 PC 1154 A 1 HETATM 9 C C3 PC . . . K 4 -14.829 -22.388 22.108 1 259.33 ? C3 PC 1154 A 1 HETATM 10 C C4 PC . . . K 4 -13.104 -21.563 20.592 1 259.23 ? C4 PC 1154 A 1 HETATM 11 C C5 PC . . . K 4 -12.719 -23.575 21.902 1 259.46 ? C5 PC 1154 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #