data_4CNE # _model_server_result.job_id 5rvYNnwR66iS3yEI7HEeKA _model_server_result.datetime_utc '2024-10-10 23:35:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 4CNE # _exptl.entry_id 4CNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.75 _cell.angle_gamma 90 _cell.entry_id 4CNE _cell.length_a 42.44 _cell.length_b 72.85 _cell.length_c 55.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 293 n n N HN1 SAH sing 294 n n N HN2 SAH sing 295 n n CA CB SAH sing 296 n n CA C SAH sing 297 n n CA HA SAH sing 298 n n CB CG SAH sing 299 n n CB HB1 SAH sing 300 n n CB HB2 SAH sing 301 n n CG SD SAH sing 302 n n CG HG1 SAH sing 303 n n CG HG2 SAH sing 304 n n SD C5' SAH sing 305 n n C O SAH doub 306 n n C OXT SAH sing 307 n n OXT HXT SAH sing 308 n n C5' C4' SAH sing 309 n n C5' "H5'1" SAH sing 310 n n C5' "H5'2" SAH sing 311 n n C4' O4' SAH sing 312 n n C4' C3' SAH sing 313 n n C4' H4' SAH sing 314 n n O4' C1' SAH sing 315 n n C3' O3' SAH sing 316 n n C3' C2' SAH sing 317 n n C3' H3' SAH sing 318 n n O3' HO3' SAH sing 319 n n C2' O2' SAH sing 320 n n C2' C1' SAH sing 321 n n C2' H2' SAH sing 322 n n O2' HO2' SAH sing 323 n n C1' N9 SAH sing 324 n n C1' H1' SAH sing 325 n n N9 C8 SAH sing 326 n y N9 C4 SAH sing 327 n y C8 N7 SAH doub 328 n y C8 H8 SAH sing 329 n n N7 C5 SAH sing 330 n y C5 C6 SAH sing 331 n y C5 C4 SAH doub 332 n y C6 N6 SAH sing 333 n n C6 N1 SAH doub 334 n y N6 HN61 SAH sing 335 n n N6 HN62 SAH sing 336 n n N1 C2 SAH sing 337 n y C2 N3 SAH doub 338 n y C2 H2 SAH sing 339 n n N3 C4 SAH sing 340 n y # _atom_sites.entry_id 4CNE _atom_sites.fract_transf_matrix[1][1] 0.023563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007542 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 400 400 SAH SAH . D 2 SAH B 1 400 400 SAH SAH . E 3 PEG B 1 1200 1200 PEG PEG . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH B 1 2001 2001 HOH HOH . G 4 HOH B 2 2002 2002 HOH HOH . G 4 HOH B 3 2003 2003 HOH HOH . G 4 HOH B 4 2004 2004 HOH HOH . G 4 HOH B 5 2005 2005 HOH HOH . G 4 HOH B 6 2006 2006 HOH HOH . G 4 HOH B 7 2007 2007 HOH HOH . G 4 HOH B 8 2008 2008 HOH HOH . G 4 HOH B 9 2009 2009 HOH HOH . G 4 HOH B 10 2010 2010 HOH HOH . G 4 HOH B 11 2011 2011 HOH HOH . G 4 HOH B 12 2012 2012 HOH HOH . G 4 HOH B 13 2013 2013 HOH HOH . G 4 HOH B 14 2014 2014 HOH HOH . G 4 HOH B 15 2015 2015 HOH HOH . G 4 HOH B 16 2016 2016 HOH HOH . G 4 HOH B 17 2017 2017 HOH HOH . G 4 HOH B 18 2018 2018 HOH HOH . G 4 HOH B 19 2019 2019 HOH HOH . G 4 HOH B 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 -3.486 33.89 31.127 0.5 51.59 ? N SAH 400 A 1 HETATM 2 C CA SAH . . . C 2 -2.802 32.567 31.108 0.5 53.12 ? CA SAH 400 A 1 HETATM 3 C CB SAH . . . C 2 -3.475 31.745 30.005 0.5 54.28 ? CB SAH 400 A 1 HETATM 4 C CG SAH . . . C 2 -4.957 31.48 30.33 0.5 56.45 ? CG SAH 400 A 1 HETATM 5 S SD SAH . . . C 2 -5.498 29.879 29.752 1 65.3 ? SD SAH 400 A 1 HETATM 6 C C SAH . . . C 2 -1.293 32.702 30.928 0.5 52.46 ? C SAH 400 A 1 HETATM 7 O O SAH . . . C 2 -0.519 31.744 31.072 0.5 40.37 ? O SAH 400 A 1 HETATM 8 O OXT SAH . . . C 2 -0.756 33.791 30.691 0.5 54.68 ? OXT SAH 400 A 1 HETATM 9 C C5' SAH . . . C 2 -6.083 28.993 31.162 1 64.24 ? C5' SAH 400 A 1 HETATM 10 C C4' SAH . . . C 2 -4.936 28.276 31.851 1 58.4 ? C4' SAH 400 A 1 HETATM 11 O O4' SAH . . . C 2 -4.203 27.39 30.976 1 52.99 ? O4' SAH 400 A 1 HETATM 12 C C3' SAH . . . C 2 -3.877 29.251 32.356 1 57.02 ? C3' SAH 400 A 1 HETATM 13 O O3' SAH . . . C 2 -4.224 29.83 33.598 1 49.26 ? O3' SAH 400 A 1 HETATM 14 C C2' SAH . . . C 2 -2.649 28.378 32.458 1 53.89 ? C2' SAH 400 A 1 HETATM 15 O O2' SAH . . . C 2 -2.708 27.601 33.662 1 51.04 ? O2' SAH 400 A 1 HETATM 16 C C1' SAH . . . C 2 -2.767 27.474 31.261 1 48.87 ? C1' SAH 400 A 1 HETATM 17 N N9 SAH . . . C 2 -1.966 28.021 30.083 1 51.98 ? N9 SAH 400 A 1 HETATM 18 C C8 SAH . . . C 2 -2.475 28.268 28.845 1 48.97 ? C8 SAH 400 A 1 HETATM 19 N N7 SAH . . . C 2 -1.499 28.697 27.969 1 59.02 ? N7 SAH 400 A 1 HETATM 20 C C5 SAH . . . C 2 -0.333 28.75 28.652 1 52.82 ? C5 SAH 400 A 1 HETATM 21 C C6 SAH . . . C 2 1.072 29.103 28.314 1 53.85 ? C6 SAH 400 A 1 HETATM 22 N N6 SAH . . . C 2 1.407 29.531 27.038 1 51.4 ? N6 SAH 400 A 1 HETATM 23 N N1 SAH . . . C 2 1.992 28.988 29.319 1 47.28 ? N1 SAH 400 A 1 HETATM 24 C C2 SAH . . . C 2 1.67 28.592 30.574 1 54.8 ? C2 SAH 400 A 1 HETATM 25 N N3 SAH . . . C 2 0.41 28.175 30.908 1 53.12 ? N3 SAH 400 A 1 HETATM 26 C C4 SAH . . . C 2 -0.626 28.272 30.036 1 45.57 ? C4 SAH 400 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #