data_4CNE
#
_model_server_result.job_id            cpjJgpl74iJO-dwcyvXdrA 
_model_server_result.datetime_utc      '2024-12-27 01:13:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cne 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
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_entry.id    4CNE 
#
_exptl.entry_id    4CNE 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.75 
_cell.angle_gamma         90 
_cell.entry_id            4CNE 
_cell.length_a            42.44 
_cell.length_b            72.85 
_cell.length_c            55.54 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
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_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 293 n n 
N HN1 SAH sing 294 n n 
N HN2 SAH sing 295 n n 
CA CB SAH sing 296 n n 
CA C SAH sing 297 n n 
CA HA SAH sing 298 n n 
CB CG SAH sing 299 n n 
CB HB1 SAH sing 300 n n 
CB HB2 SAH sing 301 n n 
CG SD SAH sing 302 n n 
CG HG1 SAH sing 303 n n 
CG HG2 SAH sing 304 n n 
SD C5' SAH sing 305 n n 
C O SAH doub 306 n n 
C OXT SAH sing 307 n n 
OXT HXT SAH sing 308 n n 
C5' C4' SAH sing 309 n n 
C5' "H5'1" SAH sing 310 n n 
C5' "H5'2" SAH sing 311 n n 
C4' O4' SAH sing 312 n n 
C4' C3' SAH sing 313 n n 
C4' H4' SAH sing 314 n n 
O4' C1' SAH sing 315 n n 
C3' O3' SAH sing 316 n n 
C3' C2' SAH sing 317 n n 
C3' H3' SAH sing 318 n n 
O3' HO3' SAH sing 319 n n 
C2' O2' SAH sing 320 n n 
C2' C1' SAH sing 321 n n 
C2' H2' SAH sing 322 n n 
O2' HO2' SAH sing 323 n n 
C1' N9 SAH sing 324 n n 
C1' H1' SAH sing 325 n n 
N9 C8 SAH sing 326 n y 
N9 C4 SAH sing 327 n y 
C8 N7 SAH doub 328 n y 
C8 H8 SAH sing 329 n n 
N7 C5 SAH sing 330 n y 
C5 C6 SAH sing 331 n y 
C5 C4 SAH doub 332 n y 
C6 N6 SAH sing 333 n n 
C6 N1 SAH doub 334 n y 
N6 HN61 SAH sing 335 n n 
N6 HN62 SAH sing 336 n n 
N1 C2 SAH sing 337 n y 
C2 N3 SAH doub 338 n y 
C2 H2 SAH sing 339 n n 
N3 C4 SAH sing 340 n y 
#
_atom_sites.entry_id                     4CNE 
_atom_sites.fract_transf_matrix[1][1]    0.023563 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007542 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018905 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 400 400 SAH SAH . 
D 2 SAH B 1 400 400 SAH SAH . 
E 3 PEG B 1 1200 1200 PEG PEG . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2007 2007 HOH HOH . 
G 4 HOH B 8 2008 2008 HOH HOH . 
G 4 HOH B 9 2009 2009 HOH HOH . 
G 4 HOH B 10 2010 2010 HOH HOH . 
G 4 HOH B 11 2011 2011 HOH HOH . 
G 4 HOH B 12 2012 2012 HOH HOH . 
G 4 HOH B 13 2013 2013 HOH HOH . 
G 4 HOH B 14 2014 2014 HOH HOH . 
G 4 HOH B 15 2015 2015 HOH HOH . 
G 4 HOH B 16 2016 2016 HOH HOH . 
G 4 HOH B 17 2017 2017 HOH HOH . 
G 4 HOH B 18 2018 2018 HOH HOH . 
G 4 HOH B 19 2019 2019 HOH HOH . 
G 4 HOH B 20 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 2 -3.555 4.907 23.011 1 50.1 ? N SAH 400 B 1 
HETATM 2 C CA SAH . . . D 2 -3.858 3.981 21.844 1 48.42 ? CA SAH 400 B 1 
HETATM 3 C CB SAH . . . D 2 -5.322 4.174 21.37 1 35.47 ? CB SAH 400 B 1 
HETATM 4 C CG SAH . . . D 2 -5.64 5.378 20.459 1 30.52 ? CG SAH 400 B 1 
HETATM 5 S SD SAH . . . D 2 -5.523 6.967 21.256 1 32.05 ? SD SAH 400 B 1 
HETATM 6 C C SAH . . . D 2 -2.799 4.182 20.771 1 54.63 ? C SAH 400 B 1 
HETATM 7 O O SAH . . . D 2 -1.899 5.043 20.926 1 48.95 ? O SAH 400 B 1 
HETATM 8 O OXT SAH . . . D 2 -2.763 3.487 19.744 1 58.98 ? OXT SAH 400 B 1 
HETATM 9 C C5' SAH . . . D 2 -5.734 7.992 19.779 1 27.18 ? C5' SAH 400 B 1 
HETATM 10 C C4' SAH . . . D 2 -4.419 8.451 19.183 1 25.46 ? C4' SAH 400 B 1 
HETATM 11 O O4' SAH . . . D 2 -3.683 9.324 20.1 1 25.63 ? O4' SAH 400 B 1 
HETATM 12 C C3' SAH . . . D 2 -3.424 7.398 18.842 1 28.46 ? C3' SAH 400 B 1 
HETATM 13 O O3' SAH . . . D 2 -3.635 6.659 17.63 1 30.4 ? O3' SAH 400 B 1 
HETATM 14 C C2' SAH . . . D 2 -2.154 8.178 18.81 1 25.87 ? C2' SAH 400 B 1 
HETATM 15 O O2' SAH . . . D 2 -2.013 8.887 17.606 1 25.37 ? O2' SAH 400 B 1 
HETATM 16 C C1' SAH . . . D 2 -2.311 9.18 19.936 1 23.08 ? C1' SAH 400 B 1 
HETATM 17 N N9 SAH . . . D 2 -1.816 8.676 21.249 1 24.43 ? N9 SAH 400 B 1 
HETATM 18 C C8 SAH . . . D 2 -2.57 8.524 22.381 1 26.29 ? C8 SAH 400 B 1 
HETATM 19 N N7 SAH . . . D 2 -1.776 8.12 23.418 1 25.92 ? N7 SAH 400 B 1 
HETATM 20 C C5 SAH . . . D 2 -0.501 8.046 22.957 1 26.55 ? C5 SAH 400 B 1 
HETATM 21 C C6 SAH . . . D 2 0.834 7.698 23.486 1 30.51 ? C6 SAH 400 B 1 
HETATM 22 N N6 SAH . . . D 2 1.006 7.303 24.747 1 31.03 ? N6 SAH 400 B 1 
HETATM 23 N N1 SAH . . . D 2 1.913 7.75 22.7 1 26.48 ? N1 SAH 400 B 1 
HETATM 24 C C2 SAH . . . D 2 1.812 8.125 21.387 1 33.39 ? C2 SAH 400 B 1 
HETATM 25 N N3 SAH . . . D 2 0.615 8.449 20.853 1 24.13 ? N3 SAH 400 B 1 
HETATM 26 C C4 SAH . . . D 2 -0.533 8.415 21.537 1 25.39 ? C4 SAH 400 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#