data_4CNM # _model_server_result.job_id gu3OESAQ5M4BuAOrcby1cg _model_server_result.datetime_utc '2024-10-19 07:45:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1347}' # _entry.id 4CNM # _exptl.entry_id 4CNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CNM _cell.length_a 49.31 _cell.length_b 67.31 _cell.length_c 96.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1345 NAG 2 n B NAG 2 B 2 NAG A 1350 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 62 1_555 A SG CYS 12 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf2 A SG CYS 10 A CYS 66 1_555 A SG CYS 21 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 242 A CYS 298 1_555 A SG CYS 267 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 244 A CYS 300 1_555 A SG CYS 288 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale1 A ND2 ASN 25 A ASN 81 1_555 D C1 NAG . A NAG 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 68 A ASN 124 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale3 A ND2 ASN 187 A ASN 243 1_555 E C1 NAG . A NAG 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale4 A ND2 ASN 200 A ASN 256 1_555 C C1 NAG . A NAG 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale5 A ND2 ASN 219 A ASN 275 1_555 F C1 NAG . A NAG 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 257 n n C1 O1 NAG sing 258 n n C1 O5 NAG sing 259 n n C1 H1 NAG sing 260 n n C2 C3 NAG sing 261 n n C2 N2 NAG sing 262 n n C2 H2 NAG sing 263 n n C3 C4 NAG sing 264 n n C3 O3 NAG sing 265 n n C3 H3 NAG sing 266 n n C4 C5 NAG sing 267 n n C4 O4 NAG sing 268 n n C4 H4 NAG sing 269 n n C5 C6 NAG sing 270 n n C5 O5 NAG sing 271 n n C5 H5 NAG sing 272 n n C6 O6 NAG sing 273 n n C6 H61 NAG sing 274 n n C6 H62 NAG sing 275 n n C7 C8 NAG sing 276 n n C7 N2 NAG sing 277 n n C7 O7 NAG doub 278 n n C8 H81 NAG sing 279 n n C8 H82 NAG sing 280 n n C8 H83 NAG sing 281 n n N2 HN2 NAG sing 282 n n O1 HO1 NAG sing 283 n n O3 HO3 NAG sing 284 n n O4 HO4 NAG sing 285 n n O6 HO6 NAG sing 286 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CNM _atom_sites.fract_transf_matrix[1][1] 0.02028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1346 1346 NAG NAG . D 3 NAG A 1 1347 1347 NAG NAG . E 3 NAG A 1 1348 1348 NAG NAG . F 3 NAG A 1 1349 1349 NAG NAG . G 4 PEG A 1 1351 1351 PEG PEG . H 4 PEG A 1 1352 1352 PEG PEG . I 4 PEG A 1 1353 1353 PEG PEG . J 4 PEG A 1 1354 1354 PEG PEG . K 4 PEG A 1 1355 1355 PEG PEG . L 5 CIT A 1 1356 1356 CIT CIT . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . M 6 HOH A 16 2016 2016 HOH HOH . M 6 HOH A 17 2017 2017 HOH HOH . M 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH A 19 2019 2019 HOH HOH . M 6 HOH A 20 2020 2020 HOH HOH . M 6 HOH A 21 2021 2021 HOH HOH . M 6 HOH A 22 2022 2022 HOH HOH . M 6 HOH A 23 2023 2023 HOH HOH . M 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH A 25 2025 2025 HOH HOH . M 6 HOH A 26 2026 2026 HOH HOH . M 6 HOH A 27 2027 2027 HOH HOH . M 6 HOH A 28 2028 2028 HOH HOH . M 6 HOH A 29 2029 2029 HOH HOH . M 6 HOH A 30 2030 2030 HOH HOH . M 6 HOH A 31 2031 2031 HOH HOH . M 6 HOH A 32 2032 2032 HOH HOH . M 6 HOH A 33 2033 2033 HOH HOH . M 6 HOH A 34 2034 2034 HOH HOH . M 6 HOH A 35 2035 2035 HOH HOH . M 6 HOH A 36 2036 2036 HOH HOH . M 6 HOH A 37 2037 2037 HOH HOH . M 6 HOH A 38 2038 2038 HOH HOH . M 6 HOH A 39 2039 2039 HOH HOH . M 6 HOH A 40 2040 2040 HOH HOH . M 6 HOH A 41 2041 2041 HOH HOH . M 6 HOH A 42 2042 2042 HOH HOH . M 6 HOH A 43 2043 2043 HOH HOH . M 6 HOH A 44 2044 2044 HOH HOH . M 6 HOH A 45 2045 2045 HOH HOH . M 6 HOH A 46 2046 2046 HOH HOH . M 6 HOH A 47 2047 2047 HOH HOH . M 6 HOH A 48 2048 2048 HOH HOH . M 6 HOH A 49 2049 2049 HOH HOH . M 6 HOH A 50 2050 2050 HOH HOH . M 6 HOH A 51 2051 2051 HOH HOH . M 6 HOH A 52 2052 2052 HOH HOH . M 6 HOH A 53 2053 2053 HOH HOH . M 6 HOH A 54 2054 2054 HOH HOH . M 6 HOH A 55 2055 2055 HOH HOH . M 6 HOH A 56 2056 2056 HOH HOH . M 6 HOH A 57 2057 2057 HOH HOH . M 6 HOH A 58 2058 2058 HOH HOH . M 6 HOH A 59 2059 2059 HOH HOH . M 6 HOH A 60 2060 2060 HOH HOH . M 6 HOH A 61 2061 2061 HOH HOH . M 6 HOH A 62 2062 2062 HOH HOH . M 6 HOH A 63 2063 2063 HOH HOH . M 6 HOH A 64 2064 2064 HOH HOH . M 6 HOH A 65 2065 2065 HOH HOH . M 6 HOH A 66 2066 2066 HOH HOH . M 6 HOH A 67 2067 2067 HOH HOH . M 6 HOH A 68 2068 2068 HOH HOH . M 6 HOH A 69 2069 2069 HOH HOH . M 6 HOH A 70 2070 2070 HOH HOH . M 6 HOH A 71 2071 2071 HOH HOH . M 6 HOH A 72 2072 2072 HOH HOH . M 6 HOH A 73 2073 2073 HOH HOH . M 6 HOH A 74 2074 2074 HOH HOH . M 6 HOH A 75 2075 2075 HOH HOH . M 6 HOH A 76 2076 2076 HOH HOH . M 6 HOH A 77 2077 2077 HOH HOH . M 6 HOH A 78 2078 2078 HOH HOH . M 6 HOH A 79 2079 2079 HOH HOH . M 6 HOH A 80 2080 2080 HOH HOH . M 6 HOH A 81 2081 2081 HOH HOH . M 6 HOH A 82 2082 2082 HOH HOH . M 6 HOH A 83 2083 2083 HOH HOH . M 6 HOH A 84 2084 2084 HOH HOH . M 6 HOH A 85 2085 2085 HOH HOH . M 6 HOH A 86 2086 2086 HOH HOH . M 6 HOH A 87 2087 2087 HOH HOH . M 6 HOH A 88 2088 2088 HOH HOH . M 6 HOH A 89 2089 2089 HOH HOH . M 6 HOH A 90 2090 2090 HOH HOH . M 6 HOH A 91 2091 2091 HOH HOH . M 6 HOH A 92 2092 2092 HOH HOH . M 6 HOH A 93 2093 2093 HOH HOH . M 6 HOH A 94 2094 2094 HOH HOH . M 6 HOH A 95 2095 2095 HOH HOH . M 6 HOH A 96 2096 2096 HOH HOH . M 6 HOH A 97 2097 2097 HOH HOH . M 6 HOH A 98 2098 2098 HOH HOH . M 6 HOH A 99 2099 2099 HOH HOH . M 6 HOH A 100 2100 2100 HOH HOH . M 6 HOH A 101 2101 2101 HOH HOH . M 6 HOH A 102 2102 2102 HOH HOH . M 6 HOH A 103 2103 2103 HOH HOH . M 6 HOH A 104 2104 2104 HOH HOH . M 6 HOH A 105 2105 2105 HOH HOH . M 6 HOH A 106 2106 2106 HOH HOH . M 6 HOH A 107 2107 2107 HOH HOH . M 6 HOH A 108 2108 2108 HOH HOH . M 6 HOH A 109 2109 2109 HOH HOH . M 6 HOH A 110 2110 2110 HOH HOH . M 6 HOH A 111 2111 2111 HOH HOH . M 6 HOH A 112 2112 2112 HOH HOH . M 6 HOH A 113 2113 2113 HOH HOH . M 6 HOH A 114 2114 2114 HOH HOH . M 6 HOH A 115 2115 2115 HOH HOH . M 6 HOH A 116 2116 2116 HOH HOH . M 6 HOH A 117 2117 2117 HOH HOH . M 6 HOH A 118 2118 2118 HOH HOH . M 6 HOH A 119 2119 2119 HOH HOH . M 6 HOH A 120 2120 2120 HOH HOH . M 6 HOH A 121 2121 2121 HOH HOH . M 6 HOH A 122 2122 2122 HOH HOH . M 6 HOH A 123 2123 2123 HOH HOH . M 6 HOH A 124 2124 2124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 15.878 18.015 -30.379 1 45.35 ? C1 NAG 1347 A 1 HETATM 2 C C2 NAG . . . D 3 16.435 18.415 -31.748 1 45.05 ? C2 NAG 1347 A 1 HETATM 3 C C3 NAG . . . D 3 17.668 19.305 -31.595 1 53.2 ? C3 NAG 1347 A 1 HETATM 4 C C4 NAG . . . D 3 17.389 20.453 -30.62 1 54.18 ? C4 NAG 1347 A 1 HETATM 5 C C5 NAG . . . D 3 16.788 19.951 -29.298 1 55.93 ? C5 NAG 1347 A 1 HETATM 6 C C6 NAG . . . D 3 16.307 21.091 -28.392 1 62.31 ? C6 NAG 1347 A 1 HETATM 7 C C7 NAG . . . D 3 16.568 17.156 -33.84 1 47.69 ? C7 NAG 1347 A 1 HETATM 8 C C8 NAG . . . D 3 16.98 15.896 -34.567 1 47.45 ? C8 NAG 1347 A 1 HETATM 9 N N2 NAG . . . D 3 16.794 17.236 -32.528 1 41.49 ? N2 NAG 1347 A 1 HETATM 10 O O3 NAG . . . D 3 18.07 19.829 -32.855 1 52.42 ? O3 NAG 1347 A 1 HETATM 11 O O4 NAG . . . D 3 18.621 21.108 -30.397 1 57.06 ? O4 NAG 1347 A 1 HETATM 12 O O5 NAG . . . D 3 15.677 19.111 -29.518 1 50.29 ? O5 NAG 1347 A 1 HETATM 13 O O6 NAG . . . D 3 14.902 21.234 -28.513 1 69.07 ? O6 NAG 1347 A 1 HETATM 14 O O7 NAG . . . D 3 16.026 18.075 -34.478 1 41.28 ? O7 NAG 1347 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #