data_4CP3
#
_model_server_result.job_id            BH0pgcmDrc33t4zAGrUfUA 
_model_server_result.datetime_utc      '2024-11-13 08:11:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1129}' 
#
_entry.id    4CP3 
#
_exptl.entry_id    4CP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              847.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIFABUTIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.21 
_cell.angle_gamma         90 
_cell.entry_id            4CP3 
_cell.length_a            35.172 
_cell.length_b            54.828 
_cell.length_c            58.159 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C46 H62 N4 O11' 
_chem_comp.formula_weight    847.005 
_chem_comp.id                RBT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIFABUTIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "(9S,12E,14S,15R,16S,17R,18R,19R,20S,21S,22E,24Z)-6-16,18,20- TETRAHYDROXY-1'-ISOBUTYL-14-METHOXY-7,9,15,17,19,21,25- HEPTAMETHYLSPIRO(9,4-(EPOXYPENTADECA(1,11,13)TRIENIMINO)-2H- FURO(2',3':7,8)NAPHTH(1,2-D)IMIDAZOLE-2,4'-PIPERIDINE)- 5,10,26(3H,9H)-TRIONE,16-ACETATE;ANSAMYCIN" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RBT sing 277 n n 
C1 C9 RBT sing 278 n n 
C1 O1 RBT doub 279 n n 
C2 C3 RBT doub 280 n n 
C2 N1 RBT sing 281 n n 
C3 C4 RBT sing 282 n n 
C3 N2 RBT sing 283 n n 
C4 C10 RBT sing 284 n n 
C4 N3 RBT doub 285 n n 
C5 C6 RBT doub 286 n y 
C5 C10 RBT sing 287 n y 
C5 C11 RBT sing 288 n n 
C6 C7 RBT sing 289 n y 
C6 O3 RBT sing 290 n n 
C7 C8 RBT doub 291 n y 
C7 C14 RBT sing 292 n n 
C8 C9 RBT sing 293 n y 
C8 O2 RBT sing 294 n n 
C9 C10 RBT doub 295 n y 
C11 C12 RBT sing 296 n n 
C11 O4 RBT doub 297 n n 
C12 C13 RBT sing 298 n n 
C12 O3 RBT sing 299 n n 
C12 O5 RBT sing 300 n n 
C13 H131 RBT sing 301 n n 
C13 H132 RBT sing 302 n n 
C13 H133 RBT sing 303 n n 
C14 H141 RBT sing 304 n n 
C14 H142 RBT sing 305 n n 
C14 H143 RBT sing 306 n n 
C15 C16 RBT sing 307 n n 
C15 N1 RBT sing 308 n n 
C15 O11 RBT doub 309 n n 
C16 C17 RBT doub 310 z n 
C16 C30 RBT sing 311 n n 
C17 C18 RBT sing 312 n n 
C17 H17 RBT sing 313 n n 
C18 C19 RBT doub 314 e n 
C18 H18 RBT sing 315 n n 
C19 C20 RBT sing 316 n n 
C19 H19 RBT sing 317 n n 
C20 C21 RBT sing 318 n n 
C20 C31 RBT sing 319 n n 
C20 H20 RBT sing 320 n n 
C21 C22 RBT sing 321 n n 
C21 O10 RBT sing 322 n n 
C21 H21 RBT sing 323 n n 
C22 C23 RBT sing 324 n n 
C22 C32 RBT sing 325 n n 
C22 H22 RBT sing 326 n n 
C23 C24 RBT sing 327 n n 
C23 O9 RBT sing 328 n n 
C23 H23 RBT sing 329 n n 
C24 C25 RBT sing 330 n n 
C24 C33 RBT sing 331 n n 
C24 H24 RBT sing 332 n n 
C25 C26 RBT sing 333 n n 
C25 O7 RBT sing 334 n n 
C25 H25 RBT sing 335 n n 
C26 C27 RBT sing 336 n n 
C26 C34 RBT sing 337 n n 
C26 H26 RBT sing 338 n n 
C27 C28 RBT sing 339 n n 
C27 O6 RBT sing 340 n n 
C27 H27 RBT sing 341 n n 
C28 C29 RBT doub 342 e n 
C28 H28 RBT sing 343 n n 
C29 O5 RBT sing 344 n n 
C29 H29 RBT sing 345 n n 
C30 H301 RBT sing 346 n n 
C30 H302 RBT sing 347 n n 
C30 H303 RBT sing 348 n n 
C31 H311 RBT sing 349 n n 
C31 H312 RBT sing 350 n n 
C31 H313 RBT sing 351 n n 
C32 H321 RBT sing 352 n n 
C32 H322 RBT sing 353 n n 
C32 H323 RBT sing 354 n n 
C33 H331 RBT sing 355 n n 
C33 H332 RBT sing 356 n n 
C33 H333 RBT sing 357 n n 
C34 H341 RBT sing 358 n n 
C34 H342 RBT sing 359 n n 
C34 H343 RBT sing 360 n n 
C35 C36 RBT sing 361 n n 
C35 O7 RBT sing 362 n n 
C35 O8 RBT doub 363 n n 
C36 H361 RBT sing 364 n n 
C36 H362 RBT sing 365 n n 
C36 H363 RBT sing 366 n n 
C37 O6 RBT sing 367 n n 
C37 H371 RBT sing 368 n n 
C37 H372 RBT sing 369 n n 
C37 H373 RBT sing 370 n n 
C38 C39 RBT sing 371 n n 
C38 C40 RBT sing 372 n n 
C38 N2 RBT sing 373 n n 
C38 N3 RBT sing 374 n n 
C39 C41 RBT sing 375 n n 
C39 H391 RBT sing 376 n n 
C39 H392 RBT sing 377 n n 
C40 C42 RBT sing 378 n n 
C40 H401 RBT sing 379 n n 
C40 H402 RBT sing 380 n n 
C41 N4 RBT sing 381 n n 
C41 H411 RBT sing 382 n n 
C41 H412 RBT sing 383 n n 
C42 N4 RBT sing 384 n n 
C42 H421 RBT sing 385 n n 
C42 H422 RBT sing 386 n n 
C43 C44 RBT sing 387 n n 
C43 N4 RBT sing 388 n n 
C43 H431 RBT sing 389 n n 
C43 H432 RBT sing 390 n n 
C44 C45 RBT sing 391 n n 
C44 C46 RBT sing 392 n n 
C44 H44 RBT sing 393 n n 
C45 H451 RBT sing 394 n n 
C45 H452 RBT sing 395 n n 
C45 H453 RBT sing 396 n n 
C46 H461 RBT sing 397 n n 
C46 H462 RBT sing 398 n n 
C46 H463 RBT sing 399 n n 
N1 HN1 RBT sing 400 n n 
N2 HN2 RBT sing 401 n n 
O2 HO2 RBT sing 402 n n 
O9 HO9 RBT sing 403 n n 
O10 H10 RBT sing 404 n n 
#
_atom_sites.entry_id                     4CP3 
_atom_sites.fract_transf_matrix[1][1]    0.028432 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002592 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RBT B 1 1129 1129 RBT RBT . 
D 3 HOH A 1 2001 2001 HOH HOH . 
D 3 HOH A 2 2002 2002 HOH HOH . 
D 3 HOH A 3 2003 2003 HOH HOH . 
D 3 HOH A 4 2004 2004 HOH HOH . 
D 3 HOH A 5 2005 2005 HOH HOH . 
D 3 HOH A 6 2006 2006 HOH HOH . 
D 3 HOH A 7 2007 2007 HOH HOH . 
D 3 HOH A 8 2008 2008 HOH HOH . 
D 3 HOH A 9 2009 2009 HOH HOH . 
D 3 HOH A 10 2010 2010 HOH HOH . 
D 3 HOH A 11 2011 2011 HOH HOH . 
D 3 HOH A 12 2012 2012 HOH HOH . 
D 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH B 1 2001 2001 HOH HOH . 
E 3 HOH B 2 2002 2002 HOH HOH . 
E 3 HOH B 3 2003 2003 HOH HOH . 
E 3 HOH B 4 2004 2004 HOH HOH . 
E 3 HOH B 5 2005 2005 HOH HOH . 
E 3 HOH B 6 2006 2006 HOH HOH . 
E 3 HOH B 7 2007 2007 HOH HOH . 
E 3 HOH B 8 2008 2008 HOH HOH . 
E 3 HOH B 9 2009 2009 HOH HOH . 
E 3 HOH B 10 2010 2010 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RBT . . . C 2 -5.197 14.931 -7.924 1 46.76 ? C1 RBT 1129 B 1 
HETATM 2 C C2 RBT . . . C 2 -5.439 15.867 -9.038 1 50.18 ? C2 RBT 1129 B 1 
HETATM 3 C C3 RBT . . . C 2 -4.939 15.497 -10.415 1 44.51 ? C3 RBT 1129 B 1 
HETATM 4 C C4 RBT . . . C 2 -4.277 14.212 -10.642 1 44.29 ? C4 RBT 1129 B 1 
HETATM 5 C C5 RBT . . . C 2 -3.405 12 -9.755 1 39.15 ? C5 RBT 1129 B 1 
HETATM 6 C C6 RBT . . . C 2 -3.193 11.121 -8.624 1 37.97 ? C6 RBT 1129 B 1 
HETATM 7 C C7 RBT . . . C 2 -3.632 11.451 -7.26 1 38.64 ? C7 RBT 1129 B 1 
HETATM 8 C C8 RBT . . . C 2 -4.304 12.744 -7.057 1 40.41 ? C8 RBT 1129 B 1 
HETATM 9 C C9 RBT . . . C 2 -4.512 13.65 -8.21 1 43.19 ? C9 RBT 1129 B 1 
HETATM 10 C C10 RBT . . . C 2 -4.059 13.312 -9.599 1 42.71 ? C10 RBT 1129 B 1 
HETATM 11 C C11 RBT . . . C 2 -2.784 11.318 -10.902 1 38.28 ? C11 RBT 1129 B 1 
HETATM 12 C C12 RBT . . . C 2 -2.059 10.115 -10.367 1 39.57 ? C12 RBT 1129 B 1 
HETATM 13 C C13 RBT . . . C 2 -2.409 8.882 -11.171 1 39.31 ? C13 RBT 1129 B 1 
HETATM 14 C C14 RBT . . . C 2 -3.43 10.506 -6.115 1 38.52 ? C14 RBT 1129 B 1 
HETATM 15 C C15 RBT . . . C 2 -5.759 18.223 -9.174 1 63.19 ? C15 RBT 1129 B 1 
HETATM 16 C C16 RBT . . . C 2 -6.055 19.401 -8.344 1 65.29 ? C16 RBT 1129 B 1 
HETATM 17 C C17 RBT . . . C 2 -5.129 20.315 -7.946 1 62.13 ? C17 RBT 1129 B 1 
HETATM 18 C C18 RBT . . . C 2 -3.701 20.274 -8.291 1 58.01 ? C18 RBT 1129 B 1 
HETATM 19 C C19 RBT . . . C 2 -2.893 21.235 -7.824 1 54.16 ? C19 RBT 1129 B 1 
HETATM 20 C C20 RBT . . . C 2 -1.407 21.292 -8.131 1 53.47 ? C20 RBT 1129 B 1 
HETATM 21 C C21 RBT . . . C 2 -0.754 19.921 -7.982 1 49.74 ? C21 RBT 1129 B 1 
HETATM 22 C C22 RBT . . . C 2 0.733 19.863 -8.352 1 48.17 ? C22 RBT 1129 B 1 
HETATM 23 C C23 RBT . . . C 2 1.226 18.426 -8.248 1 48.32 ? C23 RBT 1129 B 1 
HETATM 24 C C24 RBT . . . C 2 0.451 17.477 -9.171 1 52.14 ? C24 RBT 1129 B 1 
HETATM 25 C C25 RBT . . . C 2 1.119 16.102 -9.262 1 55.14 ? C25 RBT 1129 B 1 
HETATM 26 C C26 RBT . . . C 2 0.1 14.951 -9.253 1 53.91 ? C26 RBT 1129 B 1 
HETATM 27 C C27 RBT . . . C 2 0.848 13.617 -9.12 1 53.49 ? C27 RBT 1129 B 1 
HETATM 28 C C28 RBT . . . C 2 0.109 12.551 -9.916 1 47.92 ? C28 RBT 1129 B 1 
HETATM 29 C C29 RBT . . . C 2 0.109 11.261 -9.576 1 47.23 ? C29 RBT 1129 B 1 
HETATM 30 C C30 RBT . . . C 2 -7.482 19.587 -7.895 1 64.5 ? C30 RBT 1129 B 1 
HETATM 31 C C31 RBT . . . C 2 -1.232 21.846 -9.543 1 55.16 ? C31 RBT 1129 B 1 
HETATM 32 C C32 RBT . . . C 2 1.592 20.776 -7.492 1 46.82 ? C32 RBT 1129 B 1 
HETATM 33 C C33 RBT . . . C 2 0.234 18.04 -10.586 1 55.18 ? C33 RBT 1129 B 1 
HETATM 34 C C34 RBT . . . C 2 -0.993 15.068 -8.181 1 51.55 ? C34 RBT 1129 B 1 
HETATM 35 C C35 RBT . . . C 2 3.353 15.945 -10.367 1 71.33 ? C35 RBT 1129 B 1 
HETATM 36 C C36 RBT . . . C 2 4.057 14.614 -10.372 1 74.57 ? C36 RBT 1129 B 1 
HETATM 37 C C37 RBT . . . C 2 2.314 12.867 -7.342 1 55.9 ? C37 RBT 1129 B 1 
HETATM 38 C C38 RBT . . . C 2 -4.375 15.288 -12.763 1 50.26 ? C38 RBT 1129 B 1 
HETATM 39 C C39 RBT . . . C 2 -5.295 14.343 -13.538 1 52 ? C39 RBT 1129 B 1 
HETATM 40 C C40 RBT . . . C 2 -2.921 15.466 -13.216 1 51.22 ? C40 RBT 1129 B 1 
HETATM 41 C C41 RBT . . . C 2 -4.921 14.23 -15.026 1 53.32 ? C41 RBT 1129 B 1 
HETATM 42 C C42 RBT . . . C 2 -2.731 15.139 -14.713 1 52.29 ? C42 RBT 1129 B 1 
HETATM 43 C C43 RBT . . . C 2 -4.545 16.644 -15.464 1 58.68 ? C43 RBT 1129 B 1 
HETATM 44 C C44 RBT . . . C 2 -5.234 17.134 -16.753 1 59.98 ? C44 RBT 1129 B 1 
HETATM 45 C C45 RBT . . . C 2 -6.271 18.207 -16.419 1 60.64 ? C45 RBT 1129 B 1 
HETATM 46 C C46 RBT . . . C 2 -5.906 16.045 -17.604 1 62.28 ? C46 RBT 1129 B 1 
HETATM 47 N N1 RBT . . . C 2 -5.979 17.03 -8.602 1 56.12 ? N1 RBT 1129 B 1 
HETATM 48 N N2 RBT . . . C 2 -4.952 16.042 -11.623 1 45.86 ? N2 RBT 1129 B 1 
HETATM 49 N N3 RBT . . . C 2 -3.953 14.099 -11.949 1 44.84 ? N3 RBT 1129 B 1 
HETATM 50 N N4 RBT . . . C 2 -3.972 15.261 -15.508 1 53.83 ? N4 RBT 1129 B 1 
HETATM 51 O O1 RBT . . . C 2 -5.598 15.222 -6.766 1 43.7 ? O1 RBT 1129 B 1 
HETATM 52 O O2 RBT . . . C 2 -4.759 13.118 -5.83 1 39.99 ? O2 RBT 1129 B 1 
HETATM 53 O O3 RBT . . . C 2 -2.548 10.007 -9.026 1 39.9 ? O3 RBT 1129 B 1 
HETATM 54 O O4 RBT . . . C 2 -2.769 11.688 -12.047 1 36.14 ? O4 RBT 1129 B 1 
HETATM 55 O O5 RBT . . . C 2 -0.627 10.274 -10.373 1 45.37 ? O5 RBT 1129 B 1 
HETATM 56 O O6 RBT . . . C 2 1.011 13.339 -7.711 1 58.26 ? O6 RBT 1129 B 1 
HETATM 57 O O7 RBT . . . C 2 1.891 16.016 -10.478 1 63.29 ? O7 RBT 1129 B 1 
HETATM 58 O O8 RBT . . . C 2 3.986 16.984 -10.298 1 76.06 ? O8 RBT 1129 B 1 
HETATM 59 O O9 RBT . . . C 2 1.083 18.021 -6.875 1 47.56 ? O9 RBT 1129 B 1 
HETATM 60 O O10 RBT . . . C 2 -0.887 19.495 -6.63 1 49.7 ? O10 RBT 1129 B 1 
HETATM 61 O O11 RBT . . . C 2 -5.324 18.387 -10.305 1 69.56 ? O11 RBT 1129 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           61 
#