data_4CPM # _model_server_result.job_id UZxPEZGz55WKrdFa2cE_0Q _model_server_result.datetime_utc '2024-11-28 22:07:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1468}' # _entry.id 4CPM # _exptl.entry_id 4CPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CPM _cell.length_a 159.501 _cell.length_b 159.501 _cell.length_c 90.346 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 60.230667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 Q N N ? 7 R N N ? 7 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 601 NAG 2 n C NAG 2 C 2 NAG A 602 NAG 2 n C BMA 3 C 3 BMA A 603 BMA 2 n C MAN 4 C 4 MAN A 604 MAN 2 n C MAN 5 C 5 MAN A 607 MAN 3 n D NAG 1 D 1 NAG B 601 NAG 3 n D NAG 2 D 2 NAG B 602 NAG 3 n D BMA 3 D 3 BMA B 603 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 87 A CYS 86 1_555 A SG CYS 420 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 122 A CYS 121 1_555 A SG CYS 127 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 182 A CYS 181 1_555 A SG CYS 229 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 231 A CYS 230 1_555 A SG CYS 236 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 277 A CYS 276 1_555 A SG CYS 291 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 A SG CYS 279 A CYS 278 1_555 A SG CYS 289 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 A SG CYS 318 A CYS 317 1_555 A SG CYS 337 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 A SG CYS 424 A CYS 423 1_555 A SG CYS 447 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 87 B CYS 86 1_555 B SG CYS 420 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 122 B CYS 121 1_555 B SG CYS 127 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf11 B SG CYS 182 B CYS 181 1_555 B SG CYS 229 B CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 B SG CYS 231 B CYS 230 1_555 B SG CYS 236 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 B SG CYS 277 B CYS 276 1_555 B SG CYS 291 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 B SG CYS 279 B CYS 278 1_555 B SG CYS 289 B CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf15 B SG CYS 318 B CYS 317 1_555 B SG CYS 337 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 424 B CYS 423 1_555 B SG CYS 447 B CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 144 A ASN 143 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 284 A ASN 283 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 144 B ASN 143 1_555 O C1 NAG . B NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 B ND2 ASN 284 B ASN 283 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? metalc ? metalc1 A O ASP 293 A ASP 292 1_555 E CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc2 A O THR 297 A THR 296 1_555 E CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A OD2 ASP 324 A ASP 323 1_555 E CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc4 A O GLY 344 A GLY 343 1_555 E CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 A O GLY 346 A GLY 345 1_555 E CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 B O ASP 293 B ASP 292 1_555 N CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 B O THR 297 B THR 296 1_555 N CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc8 B OD2 ASP 324 B ASP 323 1_555 N CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc9 B O GLY 344 B GLY 343 1_555 N CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc10 B O GLY 346 B GLY 345 1_555 N CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc11 N CA CA . B CA 500 1_555 U O HOH . B HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 4CPM _atom_sites.fract_transf_matrix[1][1] 0.00627 _atom_sites.fract_transf_matrix[1][2] 0.00362 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CA A 1 500 500 CA CA . F 5 NAG A 1 605 605 NAG NAG . G 5 NAG A 1 611 611 NAG NAG . H 6 G39 A 1 700 700 G39 G39 . I 7 EDO A 1 1466 1466 EDO EDO . J 7 EDO A 1 1467 1467 EDO EDO . K 7 EDO A 1 1468 1468 EDO EDO . L 7 EDO A 1 1469 1469 EDO EDO . M 7 EDO A 1 1470 1470 EDO EDO . N 4 CA B 1 500 500 CA CA . O 5 NAG B 1 611 611 NAG NAG . P 6 G39 B 1 700 700 G39 G39 . Q 7 EDO B 1 1466 1466 EDO EDO . R 7 EDO B 1 1467 1467 EDO EDO . S 7 EDO B 1 1468 1468 EDO EDO . T 8 HOH A 1 2001 2001 HOH HOH . T 8 HOH A 2 2002 2002 HOH HOH . T 8 HOH A 3 2003 2003 HOH HOH . T 8 HOH A 4 2004 2004 HOH HOH . T 8 HOH A 5 2005 2005 HOH HOH . T 8 HOH A 6 2006 2006 HOH HOH . T 8 HOH A 7 2007 2007 HOH HOH . T 8 HOH A 8 2008 2008 HOH HOH . T 8 HOH A 9 2009 2009 HOH HOH . T 8 HOH A 10 2010 2010 HOH HOH . T 8 HOH A 11 2011 2011 HOH HOH . T 8 HOH A 12 2012 2012 HOH HOH . T 8 HOH A 13 2013 2013 HOH HOH . T 8 HOH A 14 2014 2014 HOH HOH . T 8 HOH A 15 2015 2015 HOH HOH . T 8 HOH A 16 2016 2016 HOH HOH . T 8 HOH A 17 2017 2017 HOH HOH . T 8 HOH A 18 2018 2018 HOH HOH . T 8 HOH A 19 2019 2019 HOH HOH . T 8 HOH A 20 2020 2020 HOH HOH . T 8 HOH A 21 2021 2021 HOH HOH . T 8 HOH A 22 2022 2022 HOH HOH . T 8 HOH A 23 2023 2023 HOH HOH . T 8 HOH A 24 2024 2024 HOH HOH . T 8 HOH A 25 2025 2025 HOH HOH . T 8 HOH A 26 2026 2026 HOH HOH . T 8 HOH A 27 2027 2027 HOH HOH . T 8 HOH A 28 2028 2028 HOH HOH . T 8 HOH A 29 2029 2029 HOH HOH . T 8 HOH A 30 2030 2030 HOH HOH . T 8 HOH A 31 2031 2031 HOH HOH . T 8 HOH A 32 2032 2032 HOH HOH . T 8 HOH A 33 2033 2033 HOH HOH . T 8 HOH A 34 2034 2034 HOH HOH . T 8 HOH A 35 2035 2035 HOH HOH . T 8 HOH A 36 2036 2036 HOH HOH . T 8 HOH A 37 2037 2037 HOH HOH . T 8 HOH A 38 2038 2038 HOH HOH . T 8 HOH A 39 2039 2039 HOH HOH . T 8 HOH A 40 2040 2040 HOH HOH . T 8 HOH A 41 2041 2041 HOH HOH . T 8 HOH A 42 2042 2042 HOH HOH . T 8 HOH A 43 2043 2043 HOH HOH . T 8 HOH A 44 2044 2044 HOH HOH . T 8 HOH A 45 2045 2045 HOH HOH . T 8 HOH A 46 2046 2046 HOH HOH . T 8 HOH A 47 2047 2047 HOH HOH . T 8 HOH A 48 2048 2048 HOH HOH . T 8 HOH A 49 2049 2049 HOH HOH . T 8 HOH A 50 2050 2050 HOH HOH . T 8 HOH A 51 2051 2051 HOH HOH . U 8 HOH B 1 2001 2001 HOH HOH . U 8 HOH B 2 2002 2002 HOH HOH . U 8 HOH B 3 2003 2003 HOH HOH . U 8 HOH B 4 2004 2004 HOH HOH . U 8 HOH B 5 2005 2005 HOH HOH . U 8 HOH B 6 2006 2006 HOH HOH . U 8 HOH B 7 2007 2007 HOH HOH . U 8 HOH B 8 2008 2008 HOH HOH . U 8 HOH B 9 2009 2009 HOH HOH . U 8 HOH B 10 2010 2010 HOH HOH . U 8 HOH B 11 2011 2011 HOH HOH . U 8 HOH B 12 2012 2012 HOH HOH . U 8 HOH B 13 2013 2013 HOH HOH . U 8 HOH B 14 2014 2014 HOH HOH . U 8 HOH B 15 2015 2015 HOH HOH . U 8 HOH B 16 2016 2016 HOH HOH . U 8 HOH B 17 2017 2017 HOH HOH . U 8 HOH B 18 2018 2018 HOH HOH . U 8 HOH B 19 2019 2019 HOH HOH . U 8 HOH B 20 2020 2020 HOH HOH . U 8 HOH B 21 2021 2021 HOH HOH . U 8 HOH B 22 2022 2022 HOH HOH . U 8 HOH B 23 2023 2023 HOH HOH . U 8 HOH B 24 2024 2024 HOH HOH . U 8 HOH B 25 2025 2025 HOH HOH . U 8 HOH B 26 2026 2026 HOH HOH . U 8 HOH B 27 2027 2027 HOH HOH . U 8 HOH B 28 2028 2028 HOH HOH . U 8 HOH B 29 2029 2029 HOH HOH . U 8 HOH B 30 2030 2030 HOH HOH . U 8 HOH B 31 2031 2031 HOH HOH . U 8 HOH B 32 2032 2032 HOH HOH . U 8 HOH B 33 2033 2033 HOH HOH . U 8 HOH B 34 2034 2034 HOH HOH . U 8 HOH B 35 2035 2035 HOH HOH . U 8 HOH B 36 2036 2036 HOH HOH . U 8 HOH B 37 2037 2037 HOH HOH . U 8 HOH B 38 2038 2038 HOH HOH . U 8 HOH B 39 2039 2039 HOH HOH . U 8 HOH B 40 2040 2040 HOH HOH . U 8 HOH B 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 7 27.97 -96.654 15.228 1 69.89 ? C1 EDO 1468 B 1 HETATM 2 O O1 EDO . . . S 7 28.993 -96.225 16.13 1 63.32 ? O1 EDO 1468 B 1 HETATM 3 C C2 EDO . . . S 7 26.622 -96.439 15.902 1 69.34 ? C2 EDO 1468 B 1 HETATM 4 O O2 EDO . . . S 7 26.787 -96.741 17.288 1 66.11 ? O2 EDO 1468 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #