data_4CQR # _model_server_result.job_id XFvlGZMcp0WQC2v9Ud1hGQ _model_server_result.datetime_utc '2024-11-22 18:50:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1330}' # _entry.id 4CQR # _exptl.entry_id 4CQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CQR _cell.length_a 101.077 _cell.length_b 101.077 _cell.length_c 451.337 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 50.5385 -87.53525 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 101.077 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 5 2 1 SIA GAL C2 O2 . O6 HO6 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1323 NAG 3 n C NAG 2 C 2 NAG A 1324 NAG 4 n D NAG 1 D 1 NAG A 1325 NAG 4 n D NAG 2 D 2 NAG A 1326 NAG 4 n D BMA 3 D 3 BMA A 1327 BMA 4 n D BMA 4 D 4 BMA A 1328 BMA 4 n D MAN 5 D 5 MAN A 1329 MAN 5 n E GAL 1 E 1 GAL A 1332 GAL 5 n E SIA 2 E 2 SIA A 1331 SIA 6 n F NAG 1 F 1 NAG B 1163 NAG 6 n F NAG 2 F 2 NAG B 1164 NAG 6 n F BMA 3 F 3 BMA B 1165 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 A SG CYS 274 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 55 A CYS 55 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 90 A CYS 90 1_555 A SG CYS 135 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 A SG CYS 278 A CYS 278 1_555 A SG CYS 302 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A ND2 ASN 11 A ASN 11 1_555 G C1 NAG . A NAG 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 23 A ASN 23 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 A ND2 ASN 286 A ASN 286 1_555 H C1 NAG . A NAG 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 B ND2 ASN 154 B ASN 154 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 D O3 BMA . D BMA 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 E O6 GAL . E GAL 1 1_555 E C2 SIA . E SIA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 337 n n C1 O1 NAG sing 338 n n C1 O5 NAG sing 339 n n C1 H1 NAG sing 340 n n C2 C3 NAG sing 341 n n C2 N2 NAG sing 342 n n C2 H2 NAG sing 343 n n C3 C4 NAG sing 344 n n C3 O3 NAG sing 345 n n C3 H3 NAG sing 346 n n C4 C5 NAG sing 347 n n C4 O4 NAG sing 348 n n C4 H4 NAG sing 349 n n C5 C6 NAG sing 350 n n C5 O5 NAG sing 351 n n C5 H5 NAG sing 352 n n C6 O6 NAG sing 353 n n C6 H61 NAG sing 354 n n C6 H62 NAG sing 355 n n C7 C8 NAG sing 356 n n C7 N2 NAG sing 357 n n C7 O7 NAG doub 358 n n C8 H81 NAG sing 359 n n C8 H82 NAG sing 360 n n C8 H83 NAG sing 361 n n N2 HN2 NAG sing 362 n n O1 HO1 NAG sing 363 n n O3 HO3 NAG sing 364 n n O4 HO4 NAG sing 365 n n O6 HO6 NAG sing 366 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CQR _atom_sites.fract_transf_matrix[1][1] 0.009893 _atom_sites.fract_transf_matrix[1][2] 0.005712 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 1322 1322 NAG NAG . H 7 NAG A 1 1330 1330 NAG NAG . I 8 MPO B 1 1166 1166 MPO MPO . J 9 HOH A 1 2001 2001 HOH HOH . J 9 HOH A 2 2002 2002 HOH HOH . J 9 HOH A 3 2003 2003 HOH HOH . J 9 HOH A 4 2004 2004 HOH HOH . J 9 HOH A 5 2005 2005 HOH HOH . J 9 HOH A 6 2006 2006 HOH HOH . J 9 HOH A 7 2007 2007 HOH HOH . J 9 HOH A 8 2008 2008 HOH HOH . J 9 HOH A 9 2009 2009 HOH HOH . J 9 HOH A 10 2010 2010 HOH HOH . J 9 HOH A 11 2011 2011 HOH HOH . J 9 HOH A 12 2012 2012 HOH HOH . J 9 HOH A 13 2013 2013 HOH HOH . J 9 HOH A 14 2014 2014 HOH HOH . J 9 HOH A 15 2015 2015 HOH HOH . J 9 HOH A 16 2016 2016 HOH HOH . J 9 HOH A 17 2017 2017 HOH HOH . J 9 HOH A 18 2018 2018 HOH HOH . J 9 HOH A 19 2019 2019 HOH HOH . J 9 HOH A 20 2020 2020 HOH HOH . J 9 HOH A 21 2021 2021 HOH HOH . J 9 HOH A 22 2022 2022 HOH HOH . J 9 HOH A 23 2023 2023 HOH HOH . J 9 HOH A 24 2024 2024 HOH HOH . J 9 HOH A 25 2025 2025 HOH HOH . J 9 HOH A 26 2026 2026 HOH HOH . J 9 HOH A 27 2027 2027 HOH HOH . J 9 HOH A 28 2028 2028 HOH HOH . J 9 HOH A 29 2029 2029 HOH HOH . J 9 HOH A 30 2030 2030 HOH HOH . J 9 HOH A 31 2031 2031 HOH HOH . J 9 HOH A 32 2032 2032 HOH HOH . J 9 HOH A 33 2033 2033 HOH HOH . J 9 HOH A 34 2034 2034 HOH HOH . J 9 HOH A 35 2035 2035 HOH HOH . J 9 HOH A 36 2036 2036 HOH HOH . J 9 HOH A 37 2037 2037 HOH HOH . J 9 HOH A 38 2038 2038 HOH HOH . J 9 HOH A 39 2039 2039 HOH HOH . J 9 HOH A 40 2040 2040 HOH HOH . J 9 HOH A 41 2041 2041 HOH HOH . J 9 HOH A 42 2042 2042 HOH HOH . K 9 HOH B 1 2001 2001 HOH HOH . K 9 HOH B 2 2002 2002 HOH HOH . K 9 HOH B 3 2003 2003 HOH HOH . K 9 HOH B 4 2004 2004 HOH HOH . K 9 HOH B 5 2005 2005 HOH HOH . K 9 HOH B 6 2006 2006 HOH HOH . K 9 HOH B 7 2007 2007 HOH HOH . K 9 HOH B 8 2008 2008 HOH HOH . K 9 HOH B 9 2009 2009 HOH HOH . K 9 HOH B 10 2010 2010 HOH HOH . K 9 HOH B 11 2011 2011 HOH HOH . K 9 HOH B 12 2012 2012 HOH HOH . K 9 HOH B 13 2013 2013 HOH HOH . K 9 HOH B 14 2014 2014 HOH HOH . K 9 HOH B 15 2015 2015 HOH HOH . K 9 HOH B 16 2016 2016 HOH HOH . K 9 HOH B 17 2017 2017 HOH HOH . K 9 HOH B 18 2018 2018 HOH HOH . K 9 HOH B 19 2019 2019 HOH HOH . K 9 HOH B 20 2020 2020 HOH HOH . K 9 HOH B 21 2021 2021 HOH HOH . K 9 HOH B 22 2022 2022 HOH HOH . K 9 HOH B 23 2023 2023 HOH HOH . K 9 HOH B 24 2024 2024 HOH HOH . K 9 HOH B 25 2025 2025 HOH HOH . K 9 HOH B 26 2026 2026 HOH HOH . K 9 HOH B 27 2027 2027 HOH HOH . K 9 HOH B 28 2028 2028 HOH HOH . K 9 HOH B 29 2029 2029 HOH HOH . K 9 HOH B 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 7 23.522 -12.093 -30.295 1 121.74 ? C1 NAG 1330 A 1 HETATM 2 C C2 NAG . . . H 7 22.197 -11.446 -29.862 1 133.34 ? C2 NAG 1330 A 1 HETATM 3 C C3 NAG . . . H 7 21.288 -11.038 -31.031 1 136.12 ? C3 NAG 1330 A 1 HETATM 4 C C4 NAG . . . H 7 22.047 -10.532 -32.261 1 138.16 ? C4 NAG 1330 A 1 HETATM 5 C C5 NAG . . . H 7 23.261 -11.409 -32.554 1 134.88 ? C5 NAG 1330 A 1 HETATM 6 C C6 NAG . . . H 7 24.086 -10.909 -33.739 1 131.64 ? C6 NAG 1330 A 1 HETATM 7 C C7 NAG . . . H 7 21.39 -12.199 -27.655 1 132.08 ? C7 NAG 1330 A 1 HETATM 8 C C8 NAG . . . H 7 20.613 -13.232 -26.889 1 128.22 ? C8 NAG 1330 A 1 HETATM 9 N N2 NAG . . . H 7 21.475 -12.36 -28.981 1 132.86 ? N2 NAG 1330 A 1 HETATM 10 O O3 NAG . . . H 7 20.394 -10.036 -30.593 1 133.94 ? O3 NAG 1330 A 1 HETATM 11 O O4 NAG . . . H 7 21.178 -10.514 -33.374 1 142.18 ? O4 NAG 1330 A 1 HETATM 12 O O5 NAG . . . H 7 24.076 -11.409 -31.405 1 130.2 ? O5 NAG 1330 A 1 HETATM 13 O O6 NAG . . . H 7 24.42 -11.998 -34.57 1 130.27 ? O6 NAG 1330 A 1 HETATM 14 O O7 NAG . . . H 7 21.906 -11.264 -27.041 1 131.3 ? O7 NAG 1330 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #