data_4CRJ # _model_server_result.job_id -3eMdT_yxz1OWUjdgdKWlA _model_server_result.datetime_utc '2024-11-24 06:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4crj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1163}' # _entry.id 4CRJ # _exptl.entry_id 4CRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.35 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CRJ _cell.length_a 82.48 _cell.length_b 82.48 _cell.length_c 52.173 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 98 A ASP 95 1_555 C MG MG . A MG 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A OD2 ASP 98 A ASP 95 1_555 D MG MG . A MG 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc3 A OD1 ASP 100 A ASP 97 1_555 C MG MG . A MG 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 A OD2 ASP 100 A ASP 97 1_555 D MG MG . A MG 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 B O1A APC . A APC 1159 1_555 C MG MG . A MG 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc6 B O1B APC . A APC 1159 1_555 C MG MG . A MG 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 B O1B APC . A APC 1159 1_555 D MG MG . A MG 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 B O1G APC . A APC 1159 1_555 D MG MG . A MG 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 C MG MG . A MG 1160 1_555 G O HOH . A HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 C MG MG . A MG 1160 1_555 G O HOH . A HOH 2047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc11 D MG MG . A MG 1161 1_555 G O HOH . A HOH 2045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc12 D MG MG . A MG 1161 1_555 G O HOH . A HOH 2046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C14 H13 N5 O3 S' _chem_comp.formula_weight 331.35 _chem_comp.id YH5 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 O3 YH5 sing 430 n n O3 C11 YH5 sing 431 n n C11 C10 YH5 doub 432 n y C11 C12 YH5 sing 433 n y C10 C9 YH5 sing 434 n y C12 C13 YH5 doub 435 n y C9 C8 YH5 doub 436 n y C13 C8 YH5 sing 437 n y C8 C7 YH5 sing 438 n n O1 C1 YH5 doub 439 n n C7 O2 YH5 doub 440 n n C7 C6 YH5 sing 441 n n C6 S1 YH5 sing 442 n n C1 C2 YH5 sing 443 n n C1 N4 YH5 sing 444 n n N1 C2 YH5 sing 445 n y N1 C3 YH5 doub 446 n y C2 C4 YH5 doub 447 n y N4 C5 YH5 sing 448 n n C3 S1 YH5 sing 449 n n C3 N2 YH5 sing 450 n y C4 N2 YH5 sing 451 n y C4 N3 YH5 sing 452 n n C5 N3 YH5 doub 453 n n C5 N5 YH5 sing 454 n n C10 H2 YH5 sing 455 n n C12 H3 YH5 sing 456 n n C13 H4 YH5 sing 457 n n C14 H5 YH5 sing 458 n n C14 H6 YH5 sing 459 n n C14 H7 YH5 sing 460 n n N2 H8 YH5 sing 461 n n N4 H9 YH5 sing 462 n n N5 H10 YH5 sing 463 n n N5 H11 YH5 sing 464 n n C6 H12 YH5 sing 465 n n C6 H13 YH5 sing 466 n n C9 H14 YH5 sing 467 n n # _atom_sites.entry_id 4CRJ _atom_sites.fract_transf_matrix[1][1] 0.012124 _atom_sites.fract_transf_matrix[1][2] 0.007 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APC A 1 1159 1159 APC APC . C 3 MG A 1 1160 1160 MG MG . D 3 MG A 1 1161 1161 MG MG . E 4 NO3 A 1 1162 1162 NO3 NO3 . F 5 YH5 A 1 1163 1163 YH5 YH5 . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YH5 . . . F 5 27.151 -32.93 1.929 1 19.57 ? C1 YH5 1163 A 1 HETATM 2 O O1 YH5 . . . F 5 26.574 -31.936 1.191 1 19.65 ? O1 YH5 1163 A 1 HETATM 3 N N1 YH5 . . . F 5 28.355 -31.468 3.569 1 22.23 ? N1 YH5 1163 A 1 HETATM 4 S S1 YH5 . . . F 5 29.944 -30.782 5.678 1 29.73 ? S1 YH5 1163 A 1 HETATM 5 C C10 YH5 . . . F 5 34.889 -32.087 6.538 1 37.04 ? C10 YH5 1163 A 1 HETATM 6 C C11 YH5 . . . F 5 35.529 -33.174 5.973 1 39.07 ? C11 YH5 1163 A 1 HETATM 7 C C12 YH5 . . . F 5 35.022 -33.742 4.832 1 38.53 ? C12 YH5 1163 A 1 HETATM 8 C C13 YH5 . . . F 5 33.885 -33.237 4.248 1 38.92 ? C13 YH5 1163 A 1 HETATM 9 C C14 YH5 . . . F 5 37.123 -33.228 7.669 1 39.53 ? C14 YH5 1163 A 1 HETATM 10 N N2 YH5 . . . F 5 29.238 -33.196 4.682 1 21.5 ? N2 YH5 1163 A 1 HETATM 11 C C2 YH5 . . . F 5 27.959 -32.65 3.007 1 21.14 ? C2 YH5 1163 A 1 HETATM 12 O O2 YH5 . . . F 5 31.653 -32.37 3.174 1 39.97 ? O2 YH5 1163 A 1 HETATM 13 N N3 YH5 . . . F 5 28.299 -35 3.394 1 18.72 ? N3 YH5 1163 A 1 HETATM 14 C C3 YH5 . . . F 5 29.116 -31.842 4.574 1 24.71 ? C3 YH5 1163 A 1 HETATM 15 O O3 YH5 . . . F 5 36.683 -33.794 6.446 1 39.25 ? O3 YH5 1163 A 1 HETATM 16 C C4 YH5 . . . F 5 28.491 -33.72 3.677 1 20.62 ? C4 YH5 1163 A 1 HETATM 17 N N4 YH5 . . . F 5 26.937 -34.199 1.587 1 19.46 ? N4 YH5 1163 A 1 HETATM 18 C C5 YH5 . . . F 5 27.512 -35.155 2.326 1 18.58 ? C5 YH5 1163 A 1 HETATM 19 N N5 YH5 . . . F 5 27.255 -36.454 1.942 1 18.38 ? N5 YH5 1163 A 1 HETATM 20 C C6 YH5 . . . F 5 31.314 -30.434 4.542 1 34.07 ? C6 YH5 1163 A 1 HETATM 21 C C7 YH5 . . . F 5 32.034 -31.692 4.119 1 37.27 ? C7 YH5 1163 A 1 HETATM 22 C C8 YH5 . . . F 5 33.247 -32.155 4.812 1 39.06 ? C8 YH5 1163 A 1 HETATM 23 C C9 YH5 . . . F 5 33.745 -31.573 5.959 1 37.22 ? C9 YH5 1163 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #