data_4CRM
#
_model_server_result.job_id            F2Gq9ORWBdM6-9DyW69Hdg 
_model_server_result.datetime_utc      '2024-11-05 01:20:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4crm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1609}' 
#
_entry.id    4CRM 
#
_exptl.entry_id    4CRM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CRM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 16 P CYS 16 1_555 E FE4 SF4 . P SF4 1611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc2 A SG CYS 55 P CYS 55 1_555 D FE2 SF4 . P SF4 1610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc3 C O1G ATP . P ATP 1609 1_555 G MG MG . P MG 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc4 C O2B ATP . P ATP 1609 1_555 G MG MG . P MG 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     4CRM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP P 1 1609 1609 ATP ATP . 
D 4 SF4 P 1 1610 1610 SF4 SF4 . 
E 4 SF4 P 1 1611 1611 SF4 SF4 . 
F 5 ADP P 1 1612 1612 ADP ADP . 
G 6 MG P 1 1613 1613 MG MG . 
H 7 HOH P 1 1903 1903 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 -15.275 65.953 -58.714 1 47.65 ? PG ATP 1609 P 1 
HETATM 2 O O1G ATP . . . C 3 -15.507 67.29 -59.376 1 46.37 ? O1G ATP 1609 P 1 
HETATM 3 O O2G ATP . . . C 3 -15.657 64.736 -59.47 1 47.77 ? O2G ATP 1609 P 1 
HETATM 4 O O3G ATP . . . C 3 -13.857 65.884 -58.295 1 49.23 ? O3G ATP 1609 P 1 
HETATM 5 P PB ATP . . . C 3 -16.459 66.891 -56.257 1 44.23 ? PB ATP 1609 P 1 
HETATM 6 O O1B ATP . . . C 3 -16.73 66.415 -54.937 1 38.15 ? O1B ATP 1609 P 1 
HETATM 7 O O2B ATP . . . C 3 -16.254 68.304 -56.547 1 42.37 ? O2B ATP 1609 P 1 
HETATM 8 O O3B ATP . . . C 3 -16.024 65.815 -57.327 1 45.41 ? O3B ATP 1609 P 1 
HETATM 9 P PA ATP . . . C 3 -19.338 67.667 -56.306 1 56.96 ? PA ATP 1609 P 1 
HETATM 10 O O1A ATP . . . C 3 -19.8 68.428 -57.439 1 56.31 ? O1A ATP 1609 P 1 
HETATM 11 O O2A ATP . . . C 3 -19.885 67.829 -54.959 1 54.3 ? O2A ATP 1609 P 1 
HETATM 12 O O3A ATP . . . C 3 -18.106 66.688 -56.559 1 53.33 ? O3A ATP 1609 P 1 
HETATM 13 O O5' ATP . . . C 3 -20.297 66.667 -56.792 1 63.79 ? O5' ATP 1609 P 1 
HETATM 14 C C5' ATP . . . C 3 -20.911 65.559 -56.767 1 73.72 ? C5' ATP 1609 P 1 
HETATM 15 C C4' ATP . . . C 3 -21.731 64.539 -56.063 1 78.74 ? C4' ATP 1609 P 1 
HETATM 16 O O4' ATP . . . C 3 -22.971 65.231 -55.8 1 81.69 ? O4' ATP 1609 P 1 
HETATM 17 C C3' ATP . . . C 3 -21.787 63.598 -57.19 1 82.85 ? C3' ATP 1609 P 1 
HETATM 18 O O3' ATP . . . C 3 -21.199 62.321 -56.959 1 81.47 ? O3' ATP 1609 P 1 
HETATM 19 C C2' ATP . . . C 3 -23.307 63.569 -57.558 1 84.57 ? C2' ATP 1609 P 1 
HETATM 20 O O2' ATP . . . C 3 -23.845 62.285 -57.327 1 89.09 ? O2' ATP 1609 P 1 
HETATM 21 C C1' ATP . . . C 3 -23.996 64.638 -56.657 1 85.45 ? C1' ATP 1609 P 1 
HETATM 22 N N9 ATP . . . C 3 -24.681 65.71 -57.403 1 88.58 ? N9 ATP 1609 P 1 
HETATM 23 C C8 ATP . . . C 3 -24.199 66.912 -57.947 1 90.9 ? C8 ATP 1609 P 1 
HETATM 24 N N7 ATP . . . C 3 -25.11 67.629 -58.543 1 92.04 ? N7 ATP 1609 P 1 
HETATM 25 C C5 ATP . . . C 3 -26.252 66.849 -58.384 1 91.44 ? C5 ATP 1609 P 1 
HETATM 26 C C6 ATP . . . C 3 -27.626 67.031 -58.778 1 91.45 ? C6 ATP 1609 P 1 
HETATM 27 N N6 ATP . . . C 3 -28.019 68.103 -59.45 1 90.94 ? N6 ATP 1609 P 1 
HETATM 28 N N1 ATP . . . C 3 -28.552 66.043 -58.451 1 91.75 ? N1 ATP 1609 P 1 
HETATM 29 C C2 ATP . . . C 3 -28.174 64.938 -57.768 1 91.38 ? C2 ATP 1609 P 1 
HETATM 30 N N3 ATP . . . C 3 -26.925 64.651 -57.339 1 90.68 ? N3 ATP 1609 P 1 
HETATM 31 C C4 ATP . . . C 3 -25.998 65.69 -57.687 1 90.83 ? C4 ATP 1609 P 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#