data_4CRS # _model_server_result.job_id DqbUv-Amo1DyI0sormLrTA _model_server_result.datetime_utc '2024-12-26 13:59:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4crs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1985}' # _entry.id 4CRS # _exptl.entry_id 4CRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CRS _cell.length_a 68.639 _cell.length_b 68.639 _cell.length_c 185.473 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 111 A PHE 754 1_555 A N SEP 112 A SEP 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C SEP 112 A SEP 755 1_555 A N GLU 113 A GLU 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C SER 172 A SER 815 1_555 A N TPO 173 A TPO 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C TPO 173 A TPO 816 1_555 A N PHE 174 A PHE 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C LEU 314 A LEU 957 1_555 A N TPO 315 A TPO 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C TPO 315 A TPO 958 1_555 A N PRO 316 A PRO 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? metalc ? metalc1 A OD1 ASN 144 A ASN 787 1_555 C MG MG . A MG 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 B O3G AGS . A AGS 1985 1_555 C MG MG . A MG 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 4CRS _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0.008411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AGS A 1 1985 1985 AGS AGS . C 3 MG A 1 1986 1986 MG MG . D 4 SO4 A 1 1987 1987 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . B 2 -9.086 38.686 192.511 1 135.09 ? PG AGS 1985 A 1 HETATM 2 S S1G AGS . . . B 2 -10.468 39.942 191.595 1 125.34 ? S1G AGS 1985 A 1 HETATM 3 O O2G AGS . . . B 2 -7.917 39.47 192.975 1 128.22 ? O2G AGS 1985 A 1 HETATM 4 O O3G AGS . . . B 2 -9.763 37.968 193.788 1 130.07 ? O3G AGS 1985 A 1 HETATM 5 P PB AGS . . . B 2 -9.091 36.097 191.271 1 104.87 ? PB AGS 1985 A 1 HETATM 6 O O1B AGS . . . B 2 -9.821 35.99 189.95 1 96.88 ? O1B AGS 1985 A 1 HETATM 7 O O2B AGS . . . B 2 -7.846 35.276 191.478 1 101.46 ? O2B AGS 1985 A 1 HETATM 8 O O3B AGS . . . B 2 -8.57 37.619 191.417 1 115.37 ? O3B AGS 1985 A 1 HETATM 9 P PA AGS . . . B 2 -10.081 34.446 193.394 1 79.69 ? PA AGS 1985 A 1 HETATM 10 O O1A AGS . . . B 2 -8.812 34.361 194.208 1 77.58 ? O1A AGS 1985 A 1 HETATM 11 O O2A AGS . . . B 2 -10.441 33.289 192.514 1 89.73 ? O2A AGS 1985 A 1 HETATM 12 O O3A AGS . . . B 2 -10.121 35.805 192.501 1 91.97 ? O3A AGS 1985 A 1 HETATM 13 O O5' AGS . . . B 2 -11.323 34.595 194.376 1 77.25 ? O5' AGS 1985 A 1 HETATM 14 C C5' AGS . . . B 2 -12.623 34.702 193.825 1 75.67 ? C5' AGS 1985 A 1 HETATM 15 C C4' AGS . . . B 2 -13.603 33.831 194.607 1 76.04 ? C4' AGS 1985 A 1 HETATM 16 O O4' AGS . . . B 2 -13.381 32.43 194.399 1 71.84 ? O4' AGS 1985 A 1 HETATM 17 C C3' AGS . . . B 2 -13.65 34.033 196.111 1 75.44 ? C3' AGS 1985 A 1 HETATM 18 O O3' AGS . . . B 2 -14.508 35.131 196.445 1 77.53 ? O3' AGS 1985 A 1 HETATM 19 C C2' AGS . . . B 2 -14.205 32.707 196.596 1 73.36 ? C2' AGS 1985 A 1 HETATM 20 O O2' AGS . . . B 2 -15.634 32.746 196.663 1 77.08 ? O2' AGS 1985 A 1 HETATM 21 C C1' AGS . . . B 2 -13.775 31.69 195.559 1 68.26 ? C1' AGS 1985 A 1 HETATM 22 N N9 AGS . . . B 2 -12.63 30.909 196.08 1 65.26 ? N9 AGS 1985 A 1 HETATM 23 C C8 AGS . . . B 2 -11.32 31.21 195.911 1 66.31 ? C8 AGS 1985 A 1 HETATM 24 N N7 AGS . . . B 2 -10.521 30.286 196.512 1 63.01 ? N7 AGS 1985 A 1 HETATM 25 C C5 AGS . . . B 2 -11.332 29.375 197.084 1 61.6 ? C5 AGS 1985 A 1 HETATM 26 C C6 AGS . . . B 2 -11.154 28.139 197.883 1 59.94 ? C6 AGS 1985 A 1 HETATM 27 N N6 AGS . . . B 2 -9.916 27.684 198.193 1 60.37 ? N6 AGS 1985 A 1 HETATM 28 N N1 AGS . . . B 2 -12.265 27.481 198.291 1 59.34 ? N1 AGS 1985 A 1 HETATM 29 C C2 AGS . . . B 2 -13.508 27.912 197.995 1 60.7 ? C2 AGS 1985 A 1 HETATM 30 N N3 AGS . . . B 2 -13.739 29.026 197.268 1 62.99 ? N3 AGS 1985 A 1 HETATM 31 C C4 AGS . . . B 2 -12.718 29.788 196.796 1 63.25 ? C4 AGS 1985 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #