data_4CSV # _model_server_result.job_id ZyI9g5Qu04lfzPATrPZ-1g _model_server_result.datetime_utc '2025-09-01 03:47:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4csv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1265}' # _entry.id 4CSV # _exptl.entry_id 4CSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.62 _cell.angle_gamma 90 _cell.entry_id 4CSV _cell.length_a 71.029 _cell.length_b 56.869 _cell.length_c 76.118 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 290 n y C1 C2 STI sing 291 n y C1 H11 STI sing 292 n n C6 C5 STI sing 293 n y C6 H61 STI sing 294 n n C5 C4 STI doub 295 n y C5 C7 STI sing 296 n y C4 N3 STI sing 297 n y C4 H41 STI sing 298 n n N3 C2 STI doub 299 n y C2 H21 STI sing 300 n n C7 C12 STI doub 301 n y C7 N8 STI sing 302 n y C12 C11 STI sing 303 n y C12 H121 STI sing 304 n n C11 N10 STI doub 305 n y C11 H111 STI sing 306 n n N10 C9 STI sing 307 n y C9 N8 STI doub 308 n y C9 N13 STI sing 309 n n N13 C14 STI sing 310 n n N13 H131 STI sing 311 n n C14 C19 STI doub 312 n y C14 C15 STI sing 313 n y C19 C18 STI sing 314 n y C19 C20 STI sing 315 n n C18 C17 STI doub 316 n y C18 H181 STI sing 317 n n C17 C16 STI sing 318 n y C17 H171 STI sing 319 n n C16 C15 STI doub 320 n y C16 N21 STI sing 321 n n C15 H151 STI sing 322 n n N21 C22 STI sing 323 n n N21 H211 STI sing 324 n n C22 C23 STI sing 325 n n C22 O29 STI doub 326 n n C23 C25 STI doub 327 n y C23 C29 STI sing 328 n y C25 C26 STI sing 329 n y C25 H251 STI sing 330 n n C26 C27 STI doub 331 n y C26 H261 STI sing 332 n n C27 C28 STI sing 333 n y C27 C46 STI sing 334 n n C28 C29 STI doub 335 n y C28 H281 STI sing 336 n n C29 H291 STI sing 337 n n C46 N48 STI sing 338 n n C46 H461 STI sing 339 n n C46 H462 STI sing 340 n n N48 C53 STI sing 341 n n N48 C49 STI sing 342 n n C53 C52 STI sing 343 n n C53 H531 STI sing 344 n n C53 H532 STI sing 345 n n C52 N51 STI sing 346 n n C52 H521 STI sing 347 n n C52 H522 STI sing 348 n n N51 C54 STI sing 349 n n N51 C50 STI sing 350 n n C54 H541 STI sing 351 n n C54 H542 STI sing 352 n n C54 H543 STI sing 353 n n C50 C49 STI sing 354 n n C50 H501 STI sing 355 n n C50 H502 STI sing 356 n n C49 H491 STI sing 357 n n C49 H492 STI sing 358 n n C20 H201 STI sing 359 n n C20 H202 STI sing 360 n n C20 H203 STI sing 361 n n # _atom_sites.entry_id 4CSV _atom_sites.fract_transf_matrix[1][1] 0.014079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 1265 1265 STI STI . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . B 2 -21.683 2.567 7.269 1 47.37 ? C1 STI 1265 A 1 HETATM 2 C C6 STI . . . B 2 -21.067 3.497 6.454 1 47.83 ? C6 STI 1265 A 1 HETATM 3 C C5 STI . . . B 2 -21.833 4.438 5.751 1 49.3 ? C5 STI 1265 A 1 HETATM 4 C C4 STI . . . B 2 -23.22 4.419 5.931 1 51.43 ? C4 STI 1265 A 1 HETATM 5 N N3 STI . . . B 2 -23.797 3.486 6.732 1 54.8 ? N3 STI 1265 A 1 HETATM 6 C C2 STI . . . B 2 -23.061 2.583 7.402 1 49.7 ? C2 STI 1265 A 1 HETATM 7 C C7 STI . . . B 2 -21.193 5.482 4.881 1 48.01 ? C7 STI 1265 A 1 HETATM 8 C C12 STI . . . B 2 -19.821 5.628 4.715 1 49.07 ? C12 STI 1265 A 1 HETATM 9 C C11 STI . . . B 2 -19.33 6.653 3.906 1 53.22 ? C11 STI 1265 A 1 HETATM 10 N N10 STI . . . B 2 -20.138 7.528 3.302 1 49.44 ? N10 STI 1265 A 1 HETATM 11 C C9 STI . . . B 2 -21.447 7.382 3.484 1 45.36 ? C9 STI 1265 A 1 HETATM 12 N N8 STI . . . B 2 -21.951 6.381 4.244 1 45.1 ? N8 STI 1265 A 1 HETATM 13 N N13 STI . . . B 2 -22.428 8.101 2.954 1 49.03 ? N13 STI 1265 A 1 HETATM 14 C C14 STI . . . B 2 -22.17 9.127 2.106 1 48.68 ? C14 STI 1265 A 1 HETATM 15 C C19 STI . . . B 2 -21.68 10.41 2.673 1 48.05 ? C19 STI 1265 A 1 HETATM 16 C C18 STI . . . B 2 -21.22 11.405 1.824 1 45.95 ? C18 STI 1265 A 1 HETATM 17 C C17 STI . . . B 2 -21.167 11.179 0.458 1 49.22 ? C17 STI 1265 A 1 HETATM 18 C C16 STI . . . B 2 -21.582 9.957 -0.108 1 49.49 ? C16 STI 1265 A 1 HETATM 19 C C15 STI . . . B 2 -22.066 8.93 0.726 1 50.39 ? C15 STI 1265 A 1 HETATM 20 N N21 STI . . . B 2 -21.453 9.867 -1.462 1 46.02 ? N21 STI 1265 A 1 HETATM 21 C C22 STI . . . B 2 -21.732 8.822 -2.275 1 48.38 ? C22 STI 1265 A 1 HETATM 22 C C23 STI . . . B 2 -21.752 9.024 -3.765 1 47.37 ? C23 STI 1265 A 1 HETATM 23 C C25 STI . . . B 2 -21.244 10.16 -4.361 1 47 ? C25 STI 1265 A 1 HETATM 24 C C26 STI . . . B 2 -21.311 10.307 -5.739 1 53.36 ? C26 STI 1265 A 1 HETATM 25 C C27 STI . . . B 2 -21.872 9.316 -6.539 1 53.91 ? C27 STI 1265 A 1 HETATM 26 C C28 STI . . . B 2 -22.395 8.173 -5.942 1 51.34 ? C28 STI 1265 A 1 HETATM 27 C C29 STI . . . B 2 -22.343 8.045 -4.557 1 48.93 ? C29 STI 1265 A 1 HETATM 28 C C46 STI . . . B 2 -21.945 9.502 -8.032 1 53.78 ? C46 STI 1265 A 1 HETATM 29 N N48 STI . . . B 2 -20.771 9.144 -8.87 1 58.53 ? N48 STI 1265 A 1 HETATM 30 C C53 STI . . . B 2 -20.85 9.852 -10.183 1 51.92 ? C53 STI 1265 A 1 HETATM 31 C C52 STI . . . B 2 -19.542 10.375 -10.806 1 54.48 ? C52 STI 1265 A 1 HETATM 32 N N51 STI . . . B 2 -18.274 9.84 -10.227 1 56.75 ? N51 STI 1265 A 1 HETATM 33 C C54 STI . . . B 2 -17.231 9.551 -11.242 1 57.07 ? C54 STI 1265 A 1 HETATM 34 C C50 STI . . . B 2 -18.437 8.765 -9.23 1 56.76 ? C50 STI 1265 A 1 HETATM 35 C C49 STI . . . B 2 -19.453 9.236 -8.213 1 56.75 ? C49 STI 1265 A 1 HETATM 36 O O29 STI . . . B 2 -22.022 7.703 -1.904 1 46.85 ? O29 STI 1265 A 1 HETATM 37 C C20 STI . . . B 2 -21.756 10.643 4.162 1 48.37 ? C20 STI 1265 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #