data_4CUD # _model_server_result.job_id kK4JWja9JnyflrKn7vg6iw _model_server_result.datetime_utc '2024-12-21 13:45:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 4CUD # _exptl.entry_id 4CUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-fucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CUD _cell.length_a 28.29 _cell.length_b 28.29 _cell.length_c 282.732 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 42.435 -24.499859 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 416 1_555 A SG CYS 21 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 15 A CYS 423 1_555 A SG CYS 30 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 32 A CYS 440 1_555 A SG CYS 41 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 48 A CYS 456 1_555 A SG CYS 59 A CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 53 A CYS 461 1_555 A SG CYS 68 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 70 A CYS 478 1_555 A SG CYS 79 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 A SG CYS 86 A CYS 494 1_555 A SG CYS 97 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 91 A CYS 499 1_555 A SG CYS 106 A CYS 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 108 A CYS 516 1_555 A SG CYS 117 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B C1 FUC . A FUC 1 1_555 A OG1 THR 58 A THR 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OD1 ASP 4 A ASP 412 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc2 A OD2 ASP 4 A ASP 412 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc3 A O VAL 5 A VAL 413 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OE1 GLU 7 A GLU 415 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc5 A OD1 ASN 23 A ASN 431 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 A O THR 24 A THR 432 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 A O SER 27 A SER 435 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc8 A OD1 ASP 44 A ASP 452 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc9 A O VAL 45 A VAL 453 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 A OE1 GLU 47 A GLU 455 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc11 A OD1 ASP 61 A ASP 469 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 A O GLN 62 A GLN 470 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc13 A OD1 ASN 82 A ASN 490 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc14 A O THR 83 A THR 491 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc15 A OE1 GLU 85 A GLU 493 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc16 A OD1 ASP 99 A ASP 507 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc17 A OD2 ASP 99 A ASP 507 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc18 A O LYS 100 A LYS 508 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc19 A OE2 GLU 103 A GLU 511 1_555 F CA CA . A CA 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc20 A OE2 GLU 103 A GLU 511 4_645 F CA CA . A CA 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc21 A OE1 GLU 103 A GLU 511 4_645 F CA CA . A CA 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc22 A OE1 GLU 103 A GLU 511 1_555 F CA CA . A CA 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc23 A NE2 HIS 115 A HIS 523 1_555 F CA CA . A CA 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc24 A NE2 HIS 115 A HIS 523 4_645 F CA CA . A CA 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc25 C CA CA . A CA 1531 1_555 G O HOH . A HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc26 C CA CA . A CA 1531 1_555 G O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc27 D CA CA . A CA 1532 1_555 G O HOH . A HOH 2032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc28 E CA CA . A CA 1533 1_555 G O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-fucopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUC sing 83 n n C1 O1 FUC sing 84 n n C1 O5 FUC sing 85 n n C1 H1 FUC sing 86 n n C2 C3 FUC sing 87 n n C2 O2 FUC sing 88 n n C2 H2 FUC sing 89 n n C3 C4 FUC sing 90 n n C3 O3 FUC sing 91 n n C3 H3 FUC sing 92 n n C4 C5 FUC sing 93 n n C4 O4 FUC sing 94 n n C4 H4 FUC sing 95 n n C5 C6 FUC sing 96 n n C5 O5 FUC sing 97 n n C5 H5 FUC sing 98 n n C6 H61 FUC sing 99 n n C6 H62 FUC sing 100 n n C6 H63 FUC sing 101 n n O1 HO1 FUC sing 102 n n O2 HO2 FUC sing 103 n n O3 HO3 FUC sing 104 n n O4 HO4 FUC sing 105 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUC a-L-fucopyranose 'COMMON NAME' GMML 1 FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CUD _atom_sites.fract_transf_matrix[1][1] 0.035348 _atom_sites.fract_transf_matrix[1][2] 0.020408 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.040817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUC A 1 1 1 FUC FUC . C 3 CA A 1 1531 1531 CA CA . D 3 CA A 1 1532 1532 CA CA . E 3 CA A 1 1533 1533 CA CA . F 3 CA A 1 1534 1534 CA CA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUC . . . B 2 17.862 -17.504 21.767 1 27.73 ? C1 FUC 1 A 1 HETATM 2 C C2 FUC . . . B 2 17.282 -18.785 21.159 1 30.29 ? C2 FUC 1 A 1 HETATM 3 C C3 FUC . . . B 2 16.309 -18.428 20.03 1 31 ? C3 FUC 1 A 1 HETATM 4 C C4 FUC . . . B 2 16.965 -17.503 18.995 1 30.25 ? C4 FUC 1 A 1 HETATM 5 C C5 FUC . . . B 2 17.632 -16.3 19.685 1 29.2 ? C5 FUC 1 A 1 HETATM 6 C C6 FUC . . . B 2 18.456 -15.457 18.717 1 28.58 ? C6 FUC 1 A 1 HETATM 7 O O2 FUC . . . B 2 16.628 -19.548 22.152 1 30.37 ? O2 FUC 1 A 1 HETATM 8 O O3 FUC . . . B 2 15.804 -19.605 19.436 1 33.29 ? O3 FUC 1 A 1 HETATM 9 O O4 FUC . . . B 2 17.93 -18.196 18.235 1 31.61 ? O4 FUC 1 A 1 HETATM 10 O O5 FUC . . . B 2 18.477 -16.712 20.757 1 27.62 ? O5 FUC 1 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1340 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 10 #