data_4CUF # _model_server_result.job_id 4qajy8DADM-QgU1WdxmFjw _model_server_result.datetime_utc '2024-10-28 02:30:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1534}' # _entry.id 4CUF # _exptl.entry_id 4CUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CUF _cell.length_a 61.77 _cell.length_b 61.77 _cell.length_c 126.56 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 416 1_555 A SG CYS 21 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 15 A CYS 423 1_555 A SG CYS 30 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 32 A CYS 440 1_555 A SG CYS 41 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 48 A CYS 456 1_555 A SG CYS 59 A CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 A SG CYS 53 A CYS 461 1_555 A SG CYS 68 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 A SG CYS 70 A CYS 478 1_555 A SG CYS 79 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 A SG CYS 86 A CYS 494 1_555 A SG CYS 97 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf8 A SG CYS 91 A CYS 499 1_555 A SG CYS 106 A CYS 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 A SG CYS 108 A CYS 516 1_555 A SG CYS 117 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc1 A O VAL 5 A VAL 413 1_555 D CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A OE1 GLU 7 A GLU 415 1_555 D CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A OD1 ASN 23 A ASN 431 1_555 D CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A O THR 24 A THR 432 1_555 D CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 A O SER 27 A SER 435 1_555 D CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A OD1 ASP 44 A ASP 452 1_555 B CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 A O VAL 45 A VAL 453 1_555 B CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 A OE1 GLU 47 A GLU 455 1_555 B CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc9 A OD1 ASP 61 A ASP 469 1_555 B CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc10 A O GLN 62 A GLN 470 1_555 B CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 A OD1 ASN 82 A ASN 490 1_555 C CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc12 A O THR 83 A THR 491 1_555 C CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc13 A OE1 GLU 85 A GLU 493 1_555 C CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc14 A OD1 ASP 99 A ASP 507 1_555 C CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc15 A OD2 ASP 99 A ASP 507 1_555 C CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc16 A O LYS 100 A LYS 508 1_555 C CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc17 D CA CA . A CA 1533 1_555 F O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4CUF _atom_sites.fract_transf_matrix[1][1] 0.016189 _atom_sites.fract_transf_matrix[1][2] 0.009347 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1531 1531 CA CA . C 2 CA A 1 1532 1532 CA CA . D 2 CA A 1 1533 1533 CA CA . E 3 EDO A 1 1534 1534 EDO EDO . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 4.798 -22.242 5.706 1 95.41 ? C1 EDO 1534 A 1 HETATM 2 O O1 EDO . . . E 3 4.41 -21.051 5.027 1 94.79 ? O1 EDO 1534 A 1 HETATM 3 C C2 EDO . . . E 3 4.882 -23.427 4.701 1 94.51 ? C2 EDO 1534 A 1 HETATM 4 O O2 EDO . . . E 3 5.264 -24.616 5.373 1 93.06 ? O2 EDO 1534 A 1 HETATM 5 H H11 EDO . . . E 3 4.015 -22.412 6.444 1 95.66 ? H11 EDO 1534 A 1 HETATM 6 H H12 EDO . . . E 3 5.732 -22.123 6.254 1 95.48 ? H12 EDO 1534 A 1 HETATM 7 H HO1 EDO . . . E 3 4.414 -20.317 5.696 1 94.62 ? HO1 EDO 1534 A 1 HETATM 8 H H21 EDO . . . E 3 5.547 -23.188 3.872 1 94.73 ? H21 EDO 1534 A 1 HETATM 9 H H22 EDO . . . E 3 3.906 -23.653 4.272 1 94.44 ? H22 EDO 1534 A 1 HETATM 10 H HO2 EDO . . . E 3 5.472 -25.291 4.675 1 92.86 ? HO2 EDO 1534 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #