data_4CUN # _model_server_result.job_id -9AreW3oulFgY9xYHr5yHA _model_server_result.datetime_utc '2024-10-19 00:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 4CUN # _exptl.entry_id 4CUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CUN _cell.length_a 58.865 _cell.length_b 106.177 _cell.length_c 156.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 147 A CYS 186 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc2 H ZN ZN . A ZN 1483 1_555 A SG CYS 57 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 H ZN ZN . A ZN 1483 1_555 A SG CYS 62 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 H ZN ZN . A ZN 1483 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 H ZN ZN . A ZN 1483 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 4CUN _atom_sites.fract_transf_matrix[1][1] 0.016988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARG A 1 700 700 ARG ARG . D 3 HEM A 1 500 500 HEM HEM . E 4 WS6 A 1 800 800 WS6 WS6 . F 5 ACT A 1 860 860 ACT ACT . G 6 GOL A 1 880 880 GOL GOL . H 7 ZN A 1 1483 1483 ZN ZN . I 2 ARG B 1 700 700 ARG ARG . J 3 HEM B 1 500 500 HEM HEM . K 4 WS6 B 1 800 800 WS6 WS6 . L 5 ACT B 1 860 860 ACT ACT . M 6 GOL B 1 880 880 GOL GOL . N 8 HOH A 1 2001 2001 HOH HOH . N 8 HOH A 2 2002 2002 HOH HOH . N 8 HOH A 3 2003 2003 HOH HOH . N 8 HOH A 4 2004 2004 HOH HOH . N 8 HOH A 5 2005 2005 HOH HOH . N 8 HOH A 6 2006 2006 HOH HOH . N 8 HOH A 7 2007 2007 HOH HOH . N 8 HOH A 8 2008 2008 HOH HOH . N 8 HOH A 9 2009 2009 HOH HOH . N 8 HOH A 10 2010 2010 HOH HOH . N 8 HOH A 11 2011 2011 HOH HOH . N 8 HOH A 12 2012 2012 HOH HOH . N 8 HOH A 13 2013 2013 HOH HOH . N 8 HOH A 14 2014 2014 HOH HOH . N 8 HOH A 15 2015 2015 HOH HOH . N 8 HOH A 16 2016 2016 HOH HOH . N 8 HOH A 17 2017 2017 HOH HOH . N 8 HOH A 18 2018 2018 HOH HOH . N 8 HOH A 19 2019 2019 HOH HOH . N 8 HOH A 20 2020 2020 HOH HOH . N 8 HOH A 21 2021 2021 HOH HOH . N 8 HOH A 22 2022 2022 HOH HOH . N 8 HOH A 23 2023 2023 HOH HOH . N 8 HOH A 24 2024 2024 HOH HOH . N 8 HOH A 25 2025 2025 HOH HOH . N 8 HOH A 26 2026 2026 HOH HOH . N 8 HOH A 27 2027 2027 HOH HOH . N 8 HOH A 28 2028 2028 HOH HOH . N 8 HOH A 29 2029 2029 HOH HOH . N 8 HOH A 30 2030 2030 HOH HOH . N 8 HOH A 31 2031 2031 HOH HOH . N 8 HOH A 32 2032 2032 HOH HOH . N 8 HOH A 33 2033 2033 HOH HOH . N 8 HOH A 34 2034 2034 HOH HOH . N 8 HOH A 35 2035 2035 HOH HOH . N 8 HOH A 36 2036 2036 HOH HOH . O 8 HOH B 1 2001 2001 HOH HOH . O 8 HOH B 2 2002 2002 HOH HOH . O 8 HOH B 3 2003 2003 HOH HOH . O 8 HOH B 4 2004 2004 HOH HOH . O 8 HOH B 5 2005 2005 HOH HOH . O 8 HOH B 6 2006 2006 HOH HOH . O 8 HOH B 7 2007 2007 HOH HOH . O 8 HOH B 8 2008 2008 HOH HOH . O 8 HOH B 9 2009 2009 HOH HOH . O 8 HOH B 10 2010 2010 HOH HOH . O 8 HOH B 11 2011 2011 HOH HOH . O 8 HOH B 12 2012 2012 HOH HOH . O 8 HOH B 13 2013 2013 HOH HOH . O 8 HOH B 14 2014 2014 HOH HOH . O 8 HOH B 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 9.015 9.016 34.92 1 40.02 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . D 3 4.214 8.729 33.603 1 45.86 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . D 3 5.551 7.278 29.243 1 43.03 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . D 3 10.106 6.576 31.087 1 42.69 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . D 3 7.624 9.163 34.817 1 41.77 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . D 3 6.926 9.926 35.869 1 46.91 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . D 3 5.492 9.897 35.538 1 40.46 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . D 3 5.452 9.104 34.268 1 43.34 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . D 3 4.404 10.523 36.382 1 38.69 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . D 3 7.57 10.615 37.031 1 54.13 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . D 3 7.604 12.047 36.491 1 62.66 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . D 3 8.163 13.067 37.44 1 65.51 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . D 3 9.201 13.679 37.084 1 71.16 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . D 3 7.538 13.263 38.501 1 64.3 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . D 3 4.166 8.293 32.256 1 43.44 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . D 3 2.887 8.394 31.526 1 48.39 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . D 3 3.309 7.931 30.226 1 46.74 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . D 3 4.745 7.639 30.388 1 43.36 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . D 3 1.545 8.807 32.016 1 41.61 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . D 3 2.458 7.808 29.039 1 54.03 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . D 3 2.75 6.9 28.132 1 61.7 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . D 3 6.957 7.026 29.295 1 40.71 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . D 3 7.772 6.554 28.145 1 44.59 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . D 3 9.119 6.347 28.718 1 42.4 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . D 3 9.033 6.727 30.127 1 42.75 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . D 3 7.335 6.335 26.728 1 48.47 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . D 3 10.347 5.858 28.021 1 51.25 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . D 3 10.314 5.088 26.938 1 46.03 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . D 3 10.215 7.226 32.333 1 37.94 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . D 3 11.551 7.395 32.966 1 43.76 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . D 3 11.207 8.158 34.15 1 43.68 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . D 3 9.753 8.289 33.977 1 42.06 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . D 3 12.877 6.92 32.484 1 41.3 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . D 3 12.091 8.692 35.231 1 57.52 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . D 3 12.647 10.061 34.824 1 63.93 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . D 3 13.402 10.688 35.984 1 62.9 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . D 3 14.029 9.935 36.789 1 68.58 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . D 3 13.339 11.932 36.077 1 61.95 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . D 3 6.774 8.741 33.741 1 42 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . D 3 5.243 7.889 31.608 1 41.18 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . D 3 7.731 7.25 30.459 1 41.86 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . D 3 9.168 7.757 32.893 1 40.06 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . D 3 7.178 7.529 32.269 1 47.27 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #