data_4CUN # _model_server_result.job_id nZ0x63ldTVZKYPWz_YIMOg _model_server_result.datetime_utc '2024-11-22 01:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":500}' # _entry.id 4CUN # _exptl.entry_id 4CUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CUN _cell.length_a 58.865 _cell.length_b 106.177 _cell.length_c 156.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 H ZN ZN . A ZN 1483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 H ZN ZN . A ZN 1483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc4 H ZN ZN . A ZN 1483 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 H ZN ZN . A ZN 1483 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 169 n n CHA C4D HEM doub 170 n n CHA HHA HEM sing 171 n n CHB C4A HEM sing 172 n n CHB C1B HEM doub 173 n n CHB HHB HEM sing 174 n n CHC C4B HEM sing 175 n n CHC C1C HEM doub 176 n n CHC HHC HEM sing 177 n n CHD C4C HEM doub 178 n n CHD C1D HEM sing 179 n n CHD HHD HEM sing 180 n n C1A C2A HEM doub 181 n y C1A NA HEM sing 182 n y C2A C3A HEM sing 183 n y C2A CAA HEM sing 184 n n C3A C4A HEM doub 185 n y C3A CMA HEM sing 186 n n C4A NA HEM sing 187 n y CMA HMA HEM sing 188 n n CMA HMAA HEM sing 189 n n CMA HMAB HEM sing 190 n n CAA CBA HEM sing 191 n n CAA HAA HEM sing 192 n n CAA HAAA HEM sing 193 n n CBA CGA HEM sing 194 n n CBA HBA HEM sing 195 n n CBA HBAA HEM sing 196 n n CGA O1A HEM doub 197 n n CGA O2A HEM sing 198 n n C1B C2B HEM sing 199 n n C1B NB HEM sing 200 n n C2B C3B HEM doub 201 n n C2B CMB HEM sing 202 n n C3B C4B HEM sing 203 n n C3B CAB HEM sing 204 n n C4B NB HEM doub 205 n n CMB HMB HEM sing 206 n n CMB HMBA HEM sing 207 n n CMB HMBB HEM sing 208 n n CAB CBB HEM doub 209 n n CAB HAB HEM sing 210 n n CBB HBB HEM sing 211 n n CBB HBBA HEM sing 212 n n C1C C2C HEM sing 213 n y C1C NC HEM sing 214 n y C2C C3C HEM doub 215 n y C2C CMC HEM sing 216 n n C3C C4C HEM sing 217 n y C3C CAC HEM sing 218 n n C4C NC HEM sing 219 n y CMC HMC HEM sing 220 n n CMC HMCA HEM sing 221 n n CMC HMCB HEM sing 222 n n CAC CBC HEM doub 223 n n CAC HAC HEM sing 224 n n CBC HBC HEM sing 225 n n CBC HBCA HEM sing 226 n n C1D C2D HEM sing 227 n n C1D ND HEM doub 228 n n C2D C3D HEM doub 229 n n C2D CMD HEM sing 230 n n C3D C4D HEM sing 231 n n C3D CAD HEM sing 232 n n C4D ND HEM sing 233 n n CMD HMD HEM sing 234 n n CMD HMDA HEM sing 235 n n CMD HMDB HEM sing 236 n n CAD CBD HEM sing 237 n n CAD HAD HEM sing 238 n n CAD HADA HEM sing 239 n n CBD CGD HEM sing 240 n n CBD HBD HEM sing 241 n n CBD HBDA HEM sing 242 n n CGD O1D HEM doub 243 n n CGD O2D HEM sing 244 n n O2A H2A HEM sing 245 n n O2D H2D HEM sing 246 n n FE NA HEM sing 247 n n FE NB HEM sing 248 n n FE NC HEM sing 249 n n FE ND HEM sing 250 n n # _atom_sites.entry_id 4CUN _atom_sites.fract_transf_matrix[1][1] 0.016988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARG A 1 700 700 ARG ARG . D 3 HEM A 1 500 500 HEM HEM . E 4 WS6 A 1 800 800 WS6 WS6 . F 5 ACT A 1 860 860 ACT ACT . G 6 GOL A 1 880 880 GOL GOL . H 7 ZN A 1 1483 1483 ZN ZN . I 2 ARG B 1 700 700 ARG ARG . J 3 HEM B 1 500 500 HEM HEM . K 4 WS6 B 1 800 800 WS6 WS6 . L 5 ACT B 1 860 860 ACT ACT . M 6 GOL B 1 880 880 GOL GOL . N 8 HOH A 1 2001 2001 HOH HOH . N 8 HOH A 2 2002 2002 HOH HOH . N 8 HOH A 3 2003 2003 HOH HOH . N 8 HOH A 4 2004 2004 HOH HOH . N 8 HOH A 5 2005 2005 HOH HOH . N 8 HOH A 6 2006 2006 HOH HOH . N 8 HOH A 7 2007 2007 HOH HOH . N 8 HOH A 8 2008 2008 HOH HOH . N 8 HOH A 9 2009 2009 HOH HOH . N 8 HOH A 10 2010 2010 HOH HOH . N 8 HOH A 11 2011 2011 HOH HOH . N 8 HOH A 12 2012 2012 HOH HOH . N 8 HOH A 13 2013 2013 HOH HOH . N 8 HOH A 14 2014 2014 HOH HOH . N 8 HOH A 15 2015 2015 HOH HOH . N 8 HOH A 16 2016 2016 HOH HOH . N 8 HOH A 17 2017 2017 HOH HOH . N 8 HOH A 18 2018 2018 HOH HOH . N 8 HOH A 19 2019 2019 HOH HOH . N 8 HOH A 20 2020 2020 HOH HOH . N 8 HOH A 21 2021 2021 HOH HOH . N 8 HOH A 22 2022 2022 HOH HOH . N 8 HOH A 23 2023 2023 HOH HOH . N 8 HOH A 24 2024 2024 HOH HOH . N 8 HOH A 25 2025 2025 HOH HOH . N 8 HOH A 26 2026 2026 HOH HOH . N 8 HOH A 27 2027 2027 HOH HOH . N 8 HOH A 28 2028 2028 HOH HOH . N 8 HOH A 29 2029 2029 HOH HOH . N 8 HOH A 30 2030 2030 HOH HOH . N 8 HOH A 31 2031 2031 HOH HOH . N 8 HOH A 32 2032 2032 HOH HOH . N 8 HOH A 33 2033 2033 HOH HOH . N 8 HOH A 34 2034 2034 HOH HOH . N 8 HOH A 35 2035 2035 HOH HOH . N 8 HOH A 36 2036 2036 HOH HOH . O 8 HOH B 1 2001 2001 HOH HOH . O 8 HOH B 2 2002 2002 HOH HOH . O 8 HOH B 3 2003 2003 HOH HOH . O 8 HOH B 4 2004 2004 HOH HOH . O 8 HOH B 5 2005 2005 HOH HOH . O 8 HOH B 6 2006 2006 HOH HOH . O 8 HOH B 7 2007 2007 HOH HOH . O 8 HOH B 8 2008 2008 HOH HOH . O 8 HOH B 9 2009 2009 HOH HOH . O 8 HOH B 10 2010 2010 HOH HOH . O 8 HOH B 11 2011 2011 HOH HOH . O 8 HOH B 12 2012 2012 HOH HOH . O 8 HOH B 13 2013 2013 HOH HOH . O 8 HOH B 14 2014 2014 HOH HOH . O 8 HOH B 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 3 4.4 7.409 64.314 1 47.34 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . J 3 2.698 12.037 64.945 1 57.36 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . J 3 3.81 11.675 69.607 1 45.93 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . J 3 6.247 7.41 68.768 1 49.38 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . J 3 3.673 8.64 64.134 1 47.19 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . J 3 2.848 8.879 62.944 1 52.39 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . J 3 2.332 10.243 63.096 1 52.56 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . J 3 2.887 10.713 64.404 1 51.46 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . J 3 1.44 10.925 62.089 1 46.55 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . J 3 2.542 7.919 61.823 1 57.4 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . J 3 1.392 7.169 62.496 1 56.05 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . J 3 0.563 6.214 61.666 1 56.68 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . J 3 0.236 6.523 60.48 1 52.07 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . J 3 0.217 5.155 62.261 1 55.45 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . J 3 2.814 12.329 66.339 1 52.39 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . J 3 2.143 13.527 66.917 1 47.49 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . J 3 2.494 13.383 68.302 1 51.87 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . J 3 3.324 12.156 68.324 1 47.88 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . J 3 1.337 14.584 66.27 1 53.99 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . J 3 2.129 14.276 69.442 1 58.65 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . J 3 3.097 14.815 70.178 1 58.95 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . J 3 4.529 10.448 69.809 1 45.99 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . J 3 4.957 9.983 71.152 1 51.25 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . J 3 5.662 8.742 70.851 1 49.36 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . J 3 5.594 8.521 69.41 1 49.39 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . J 3 4.745 10.609 72.502 1 57.6 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . J 3 6.345 7.857 71.818 1 51.81 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . J 3 6.505 8.304 73.044 1 46.62 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . J 3 5.878 7.018 67.419 1 54.88 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . J 3 6.246 5.647 66.995 1 51.19 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . J 3 5.702 5.63 65.654 1 49.68 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . J 3 5.125 7.004 65.503 1 47.54 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . J 3 6.958 4.547 67.755 1 49.59 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . J 3 5.749 4.457 64.715 1 52.6 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . J 3 4.298 4.131 64.443 1 61.5 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . J 3 4.18 2.701 64.041 1 64.84 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . J 3 3.002 2.298 64.152 1 58.91 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . J 3 5.215 2.061 63.656 1 53.64 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . J 3 3.667 9.726 65.092 1 50.14 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . J 3 3.473 11.506 67.148 1 43.31 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . J 3 4.794 9.514 68.742 1 45.89 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . J 3 5.181 7.815 66.566 1 45.95 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . J 3 4.645 9.827 66.813 1 51.11 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #