data_4CV9 # _model_server_result.job_id Dzg0Suyy5QCOtqk5MGZDfw _model_server_result.datetime_utc '2024-11-08 06:10:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1795}' # _entry.id 4CV9 # _exptl.entry_id 4CV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.45 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-Methylpiperazin-1-yl)-N-(2-oxo-5-(pyridin-4-yl)-1,2-dihydropyridin-3-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CV9 _cell.length_a 70.38 _cell.length_b 108.72 _cell.length_c 113.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C22 H23 N5 O2' _chem_comp.formula_weight 389.45 _chem_comp.id W2K _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-Methylpiperazin-1-yl)-N-(2-oxo-5-(pyridin-4-yl)-1,2-dihydropyridin-3-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C5 W2K doub 415 n n C5 C4 W2K sing 416 n n C5 N1 W2K sing 417 n n C4 C3 W2K sing 418 n y C4 C16 W2K doub 419 n y C3 C2 W2K doub 420 n y C2 C1 W2K sing 421 n y C16 C17 W2K sing 422 n y C17 C1 W2K doub 423 n y C1 N W2K sing 424 n n N C18 W2K sing 425 n n N C W2K sing 426 n n C18 C19 W2K sing 427 n n C19 N4 W2K sing 428 n n N4 C21 W2K sing 429 n n N4 C20 W2K sing 430 n n C20 C W2K sing 431 n n N1 C6 W2K sing 432 n n C6 C10 W2K sing 433 n n C6 C7 W2K doub 434 n n C10 O W2K doub 435 n n C10 N2 W2K sing 436 n n N2 C9 W2K sing 437 n n C9 C8 W2K doub 438 n n C8 C7 W2K sing 439 n n C8 C11 W2K sing 440 n n C11 C15 W2K doub 441 n y C11 C12 W2K sing 442 n y C15 C14 W2K sing 443 n y C14 N3 W2K doub 444 n y N3 C13 W2K sing 445 n y C13 C12 W2K doub 446 n y C3 H3 W2K sing 447 n n C16 H16 W2K sing 448 n n C2 H2 W2K sing 449 n n C17 H17 W2K sing 450 n n C18 H181 W2K sing 451 n n C18 H182 W2K sing 452 n n C HC1 W2K sing 453 n n C HC2 W2K sing 454 n n C19 H191 W2K sing 455 n n C19 H192 W2K sing 456 n n C21 H211 W2K sing 457 n n C21 H212 W2K sing 458 n n C21 H213 W2K sing 459 n n C20 H201 W2K sing 460 n n C20 H202 W2K sing 461 n n C7 H7 W2K sing 462 n n C9 H9 W2K sing 463 n n C15 H15 W2K sing 464 n n C12 H12 W2K sing 465 n n C14 H14 W2K sing 466 n n C13 H13 W2K sing 467 n n N2 HN2 W2K sing 468 n n N1 HN1 W2K sing 469 n n # _atom_sites.entry_id 4CV9 _atom_sites.fract_transf_matrix[1][1] 0.014209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W2K A 1 1795 1795 W2K W2K . C 3 EDO A 1 1796 1796 EDO EDO . D 3 EDO A 1 1797 1797 EDO EDO . E 3 EDO A 1 1798 1798 EDO EDO . F 3 EDO A 1 1799 1799 EDO EDO . G 3 EDO A 1 1800 1800 EDO EDO . H 4 DMS A 1 1801 1801 DMS DMS . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 W2K . . . B 2 0.05 -17.852 -45.847 1 62.79 ? O1 W2K 1795 A 1 HETATM 2 C C5 W2K . . . B 2 -0.441 -18.458 -46.847 1 62.89 ? C5 W2K 1795 A 1 HETATM 3 C C4 W2K . . . B 2 -1.187 -17.686 -47.886 1 61.87 ? C4 W2K 1795 A 1 HETATM 4 C C3 W2K . . . B 2 -1.371 -16.302 -47.704 1 61.67 ? C3 W2K 1795 A 1 HETATM 5 C C2 W2K . . . B 2 -1.982 -15.535 -48.684 1 64.87 ? C2 W2K 1795 A 1 HETATM 6 C C16 W2K . . . B 2 -1.629 -18.329 -49.06 1 62.73 ? C16 W2K 1795 A 1 HETATM 7 C C17 W2K . . . B 2 -2.252 -17.559 -50.079 1 67.12 ? C17 W2K 1795 A 1 HETATM 8 C C1 W2K . . . B 2 -2.437 -16.123 -49.902 1 68.29 ? C1 W2K 1795 A 1 HETATM 9 N N W2K . . . B 2 -3.016 -15.204 -50.873 1 72.44 ? N W2K 1795 A 1 HETATM 10 C C18 W2K . . . B 2 -4.001 -15.727 -51.839 1 77.16 ? C18 W2K 1795 A 1 HETATM 11 C C19 W2K . . . B 2 -4.283 -14.712 -52.932 1 80.98 ? C19 W2K 1795 A 1 HETATM 12 N N4 W2K . . . B 2 -4.622 -13.411 -52.356 1 83.47 ? N4 W2K 1795 A 1 HETATM 13 C C21 W2K . . . B 2 -5.025 -12.478 -53.399 1 86.79 ? C21 W2K 1795 A 1 HETATM 14 C C20 W2K . . . B 2 -3.478 -12.893 -51.611 1 80.74 ? C20 W2K 1795 A 1 HETATM 15 C C W2K . . . B 2 -3.144 -13.797 -50.438 1 77.14 ? C W2K 1795 A 1 HETATM 16 N N1 W2K . . . B 2 -0.303 -19.871 -47.071 1 56.05 ? N1 W2K 1795 A 1 HETATM 17 C C6 W2K . . . B 2 0.358 -20.773 -46.204 1 52.27 ? C6 W2K 1795 A 1 HETATM 18 C C10 W2K . . . B 2 0.144 -22.202 -46.574 1 56.68 ? C10 W2K 1795 A 1 HETATM 19 O O W2K . . . B 2 -0.52 -22.576 -47.566 1 64.31 ? O W2K 1795 A 1 HETATM 20 N N2 W2K . . . B 2 0.657 -23.195 -45.689 1 48.5 ? N2 W2K 1795 A 1 HETATM 21 C C9 W2K . . . B 2 1.315 -22.865 -44.502 1 51.09 ? C9 W2K 1795 A 1 HETATM 22 C C8 W2K . . . B 2 1.521 -21.522 -44.174 1 55.05 ? C8 W2K 1795 A 1 HETATM 23 C C7 W2K . . . B 2 1.033 -20.467 -45.052 1 50.48 ? C7 W2K 1795 A 1 HETATM 24 C C11 W2K . . . B 2 2.272 -21.153 -42.955 1 59.86 ? C11 W2K 1795 A 1 HETATM 25 C C15 W2K . . . B 2 2.807 -19.836 -42.814 1 62.37 ? C15 W2K 1795 A 1 HETATM 26 C C14 W2K . . . B 2 3.491 -19.521 -41.619 1 64.21 ? C14 W2K 1795 A 1 HETATM 27 N N3 W2K . . . B 2 3.66 -20.434 -40.595 1 66.04 ? N3 W2K 1795 A 1 HETATM 28 C C13 W2K . . . B 2 3.144 -21.705 -40.753 1 63.28 ? C13 W2K 1795 A 1 HETATM 29 C C12 W2K . . . B 2 2.448 -22.094 -41.908 1 60.98 ? C12 W2K 1795 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 29 #