data_4CVA # _model_server_result.job_id Mc_g3DlxU-CH2bcrWoO8dg _model_server_result.datetime_utc '2025-01-25 08:09:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1795}' # _entry.id 4CVA # _exptl.entry_id 4CVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(6-oxo-1,6-dihydro-3,4'-bipyridin-5-yl)-4-(piperidin-1-yl)benzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CVA _cell.length_a 70.46 _cell.length_b 107.16 _cell.length_c 112.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C22 H22 N4 O2' _chem_comp.formula_weight 374.436 _chem_comp.id WBI _chem_comp.mon_nstd_flag . _chem_comp.name "N-(6-oxo-1,6-dihydro-3,4'-bipyridin-5-yl)-4-(piperidin-1-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C WBI sing 415 n n C1 C2 WBI sing 416 n n C C21 WBI sing 417 n n C2 N WBI sing 418 n n C21 C20 WBI sing 419 n n N C20 WBI sing 420 n n N C3 WBI sing 421 n n C4 C3 WBI doub 422 n y C4 C5 WBI sing 423 n y C3 C19 WBI sing 424 n y C5 C6 WBI doub 425 n y C19 C18 WBI doub 426 n y C6 C18 WBI sing 427 n y C6 C7 WBI sing 428 n n O C12 WBI doub 429 n n N1 C7 WBI sing 430 n n N1 C8 WBI sing 431 n n C7 O1 WBI doub 432 n n C12 C8 WBI sing 433 n n C12 N2 WBI sing 434 n n C8 C9 WBI doub 435 n n N2 C11 WBI sing 436 n n C9 C10 WBI sing 437 n n C11 C10 WBI doub 438 n n C10 C13 WBI sing 439 n n C13 C17 WBI doub 440 n y C13 C14 WBI sing 441 n y C17 C16 WBI sing 442 n y C14 C15 WBI doub 443 n y C16 N3 WBI doub 444 n y C15 N3 WBI sing 445 n y C H1 WBI sing 446 n n C H2 WBI sing 447 n n C1 H11 WBI sing 448 n n C1 H21 WBI sing 449 n n N1 HN1 WBI sing 450 n n C2 H12 WBI sing 451 n n C2 H22 WBI sing 452 n n N2 HN2 WBI sing 453 n n C4 H4 WBI sing 454 n n C5 H5 WBI sing 455 n n C9 H9 WBI sing 456 n n C11 H11A WBI sing 457 n n C14 H14 WBI sing 458 n n C15 H15 WBI sing 459 n n C16 H16 WBI sing 460 n n C17 H17 WBI sing 461 n n C18 H18 WBI sing 462 n n C19 H19 WBI sing 463 n n C20 H120 WBI sing 464 n n C20 H220 WBI sing 465 n n C21 H121 WBI sing 466 n n C21 H221 WBI sing 467 n n # _atom_sites.entry_id 4CVA _atom_sites.fract_transf_matrix[1][1] 0.014192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WBI A 1 1795 1795 WBI WBI . C 3 DMS A 1 1796 1796 DMS DMS . D 3 DMS A 1 1797 1797 DMS DMS . E 4 EDO A 1 1798 1798 EDO EDO . F 4 EDO A 1 1799 1799 EDO EDO . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C WBI . . . B 2 -4.322 -12.575 -52.507 1 77.57 ? C WBI 1795 A 1 HETATM 2 N N WBI . . . B 2 -2.987 -14.488 -50.804 1 71.92 ? N WBI 1795 A 1 HETATM 3 O O WBI . . . B 2 -0.504 -21.787 -47.43 1 53.96 ? O WBI 1795 A 1 HETATM 4 C C1 WBI . . . B 2 -4.648 -14.068 -52.602 1 76.5 ? C1 WBI 1795 A 1 HETATM 5 N N1 WBI . . . B 2 -0.341 -19.106 -46.887 1 49.39 ? N1 WBI 1795 A 1 HETATM 6 O O1 WBI . . . B 2 -0.204 -17.108 -45.647 1 61.47 ? O1 WBI 1795 A 1 HETATM 7 C C2 WBI . . . B 2 -3.477 -14.921 -52.13 1 74.35 ? C2 WBI 1795 A 1 HETATM 8 N N2 WBI . . . B 2 0.543 -22.451 -45.488 1 43.59 ? N2 WBI 1795 A 1 HETATM 9 C C3 WBI . . . B 2 -2.425 -15.409 -49.848 1 64.9 ? C3 WBI 1795 A 1 HETATM 10 N N3 WBI . . . B 2 3.677 -19.798 -40.317 1 62.6 ? N3 WBI 1795 A 1 HETATM 11 C C4 WBI . . . B 2 -2.129 -16.807 -50.093 1 60.9 ? C4 WBI 1795 A 1 HETATM 12 C C5 WBI . . . B 2 -1.566 -17.612 -49.064 1 59.28 ? C5 WBI 1795 A 1 HETATM 13 C C6 WBI . . . B 2 -1.281 -17.029 -47.799 1 58.84 ? C6 WBI 1795 A 1 HETATM 14 C C7 WBI . . . B 2 -0.56 -17.729 -46.69 1 57.73 ? C7 WBI 1795 A 1 HETATM 15 C C8 WBI . . . B 2 0.308 -20.006 -45.999 1 46.98 ? C8 WBI 1795 A 1 HETATM 16 C C9 WBI . . . B 2 0.97 -19.718 -44.813 1 45.34 ? C9 WBI 1795 A 1 HETATM 17 C C10 WBI . . . B 2 1.444 -20.799 -43.941 1 50.86 ? C10 WBI 1795 A 1 HETATM 18 C C11 WBI . . . B 2 1.204 -22.142 -44.295 1 46.72 ? C11 WBI 1795 A 1 HETATM 19 C C12 WBI . . . B 2 0.083 -21.436 -46.387 1 49.47 ? C12 WBI 1795 A 1 HETATM 20 C C13 WBI . . . B 2 2.221 -20.446 -42.706 1 57.21 ? C13 WBI 1795 A 1 HETATM 21 C C14 WBI . . . B 2 2.805 -19.152 -42.541 1 59.99 ? C14 WBI 1795 A 1 HETATM 22 C C15 WBI . . . B 2 3.518 -18.877 -41.339 1 60.84 ? C15 WBI 1795 A 1 HETATM 23 C C16 WBI . . . B 2 3.111 -21.043 -40.488 1 61.16 ? C16 WBI 1795 A 1 HETATM 24 C C17 WBI . . . B 2 2.38 -21.399 -41.66 1 59.4 ? C17 WBI 1795 A 1 HETATM 25 C C18 WBI . . . B 2 -1.59 -15.67 -47.557 1 61.57 ? C18 WBI 1795 A 1 HETATM 26 C C19 WBI . . . B 2 -2.145 -14.877 -48.55 1 63.37 ? C19 WBI 1795 A 1 HETATM 27 C C20 WBI . . . B 2 -2.699 -13.044 -50.646 1 74.68 ? C20 WBI 1795 A 1 HETATM 28 C C21 WBI . . . B 2 -3.872 -12.19 -51.099 1 76.75 ? C21 WBI 1795 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #