data_4CVM # _model_server_result.job_id 6KrBqJu5eCjfIfQHKKEvWQ _model_server_result.datetime_utc '2024-11-05 00:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1453}' # _entry.id 4CVM # _exptl.entry_id 4CVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.27 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-muramic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CVM _cell.length_a 58.54 _cell.length_b 86.05 _cell.length_c 88.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C PB UDP . A UDP 1452 1_555 D O1 MUB . A MUB 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? covale ? covale2 D C10 MUB . A MUB 1453 1_555 B N ALA . A ALA 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ALA . A ALA 1454 1_555 E N FGA . A FGA 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? metalc ? metalc1 A OG1 THR 114 A THR 114 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc2 A OG1 THR 114 A THR 114 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A OD1 ASN 140 A ASN 140 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A OD1 ASN 140 A ASN 140 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 A OE2 GLU 164 A GLU 164 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 F O2A ANP . A ANP 1456 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc7 F O2B ANP . A ANP 1456 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc8 F O2G ANP . A ANP 1456 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 F O2B ANP . A ANP 1456 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C11 H19 N O8' _chem_comp.formula_weight 293.27 _chem_comp.id MUB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-muramic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetyl-muramic acid;N-ACETYLMURAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MUB sing 305 n n C2 C3 MUB sing 306 n n C3 C4 MUB sing 307 n n C4 C5 MUB sing 308 n n C5 C6 MUB sing 309 n n C7 C8 MUB sing 310 n n C9 C10 MUB sing 311 n n C9 C11 MUB sing 312 n n C1 O1 MUB sing 313 n n C3 O3 MUB sing 314 n n C9 O3 MUB sing 315 n n C4 O4 MUB sing 316 n n C1 O5 MUB sing 317 n n C5 O5 MUB sing 318 n n C6 O6 MUB sing 319 n n C7 O7 MUB doub 320 n n C10 O11 MUB sing 321 n n C10 O10 MUB doub 322 n n C2 N2 MUB sing 323 n n C7 N2 MUB sing 324 n n C1 H1 MUB sing 325 n n C2 H2 MUB sing 326 n n N2 HN2 MUB sing 327 n n C8 H81 MUB sing 328 n n C8 H82 MUB sing 329 n n C8 H83 MUB sing 330 n n C3 H3 MUB sing 331 n n C9 H9 MUB sing 332 n n C11 H111 MUB sing 333 n n C11 H112 MUB sing 334 n n C11 H113 MUB sing 335 n n C4 H4 MUB sing 336 n n C5 H5 MUB sing 337 n n C6 H61 MUB sing 338 n n C6 H62 MUB sing 339 n n O6 HO6 MUB sing 340 n n O4 HO4 MUB sing 341 n n O11 HO11 MUB sing 342 n n O1 HO1 MUB sing 343 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MUB a-D-GlcpNAc3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MUB MurNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CVM _atom_sites.fract_transf_matrix[1][1] 0.017082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 1454 1454 ALA ALA . C 3 UDP A 1 1452 1452 UDP UDP . D 4 MUB A 1 1453 1453 MUB MUB . E 5 FGA A 1 1455 1455 FGA FGA . F 6 ANP A 1 1456 1456 ANP ANP . G 7 MG A 1 1457 1457 MG MG . H 7 MG A 1 1458 1458 MG MG . I 8 HOH A 1 2001 2001 HOH HOH . I 8 HOH A 2 2002 2002 HOH HOH . I 8 HOH A 3 2003 2003 HOH HOH . I 8 HOH A 4 2004 2004 HOH HOH . I 8 HOH A 5 2005 2005 HOH HOH . I 8 HOH A 6 2006 2006 HOH HOH . I 8 HOH A 7 2007 2007 HOH HOH . I 8 HOH A 8 2008 2008 HOH HOH . I 8 HOH A 9 2009 2009 HOH HOH . I 8 HOH A 10 2010 2010 HOH HOH . I 8 HOH A 11 2011 2011 HOH HOH . I 8 HOH A 12 2012 2012 HOH HOH . I 8 HOH A 13 2013 2013 HOH HOH . I 8 HOH A 14 2014 2014 HOH HOH . I 8 HOH A 15 2015 2015 HOH HOH . I 8 HOH A 16 2016 2016 HOH HOH . I 8 HOH A 17 2017 2017 HOH HOH . I 8 HOH A 18 2018 2018 HOH HOH . I 8 HOH A 19 2019 2019 HOH HOH . I 8 HOH A 20 2020 2020 HOH HOH . I 8 HOH A 21 2021 2021 HOH HOH . I 8 HOH A 22 2022 2022 HOH HOH . I 8 HOH A 23 2023 2023 HOH HOH . I 8 HOH A 24 2024 2024 HOH HOH . I 8 HOH A 25 2025 2025 HOH HOH . I 8 HOH A 26 2026 2026 HOH HOH . I 8 HOH A 27 2027 2027 HOH HOH . I 8 HOH A 28 2028 2028 HOH HOH . I 8 HOH A 29 2029 2029 HOH HOH . I 8 HOH A 30 2030 2030 HOH HOH . I 8 HOH A 31 2031 2031 HOH HOH . I 8 HOH A 32 2032 2032 HOH HOH . I 8 HOH A 33 2033 2033 HOH HOH . I 8 HOH A 34 2034 2034 HOH HOH . I 8 HOH A 35 2035 2035 HOH HOH . I 8 HOH A 36 2036 2036 HOH HOH . I 8 HOH A 37 2037 2037 HOH HOH . I 8 HOH A 38 2038 2038 HOH HOH . I 8 HOH A 39 2039 2039 HOH HOH . I 8 HOH A 40 2040 2040 HOH HOH . I 8 HOH A 41 2041 2041 HOH HOH . I 8 HOH A 42 2042 2042 HOH HOH . I 8 HOH A 43 2043 2043 HOH HOH . I 8 HOH A 44 2044 2044 HOH HOH . I 8 HOH A 45 2045 2045 HOH HOH . I 8 HOH A 46 2046 2046 HOH HOH . I 8 HOH A 47 2047 2047 HOH HOH . I 8 HOH A 48 2048 2048 HOH HOH . I 8 HOH A 49 2049 2049 HOH HOH . I 8 HOH A 50 2050 2050 HOH HOH . I 8 HOH A 51 2051 2051 HOH HOH . I 8 HOH A 52 2052 2052 HOH HOH . I 8 HOH A 53 2053 2053 HOH HOH . I 8 HOH A 54 2054 2054 HOH HOH . I 8 HOH A 55 2055 2055 HOH HOH . I 8 HOH A 56 2056 2056 HOH HOH . I 8 HOH A 57 2057 2057 HOH HOH . I 8 HOH A 58 2058 2058 HOH HOH . I 8 HOH A 59 2059 2059 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MUB . . . D 4 14.068 -26.658 -30.971 1 32.57 ? C1 MUB 1453 A 1 HETATM 2 C C2 MUB . . . D 4 13.714 -25.981 -29.618 1 30.72 ? C2 MUB 1453 A 1 HETATM 3 C C3 MUB . . . D 4 14.785 -26.311 -28.616 1 33.93 ? C3 MUB 1453 A 1 HETATM 4 C C4 MUB . . . D 4 14.896 -27.811 -28.598 1 34.46 ? C4 MUB 1453 A 1 HETATM 5 C C5 MUB . . . D 4 15.302 -28.284 -29.997 1 35.22 ? C5 MUB 1453 A 1 HETATM 6 C C6 MUB . . . D 4 15.632 -29.749 -29.965 1 38.12 ? C6 MUB 1453 A 1 HETATM 7 C C7 MUB . . . D 4 12.558 -23.82 -29.404 1 30.59 ? C7 MUB 1453 A 1 HETATM 8 C C8 MUB . . . D 4 12.519 -22.349 -29.783 1 30.19 ? C8 MUB 1453 A 1 HETATM 9 C C9 MUB . . . D 4 14.889 -24.67 -26.833 1 33.79 ? C9 MUB 1453 A 1 HETATM 10 C C10 MUB . . . D 4 13.945 -24.262 -25.665 1 33.11 ? C10 MUB 1453 A 1 HETATM 11 C C11 MUB . . . D 4 16.357 -24.721 -26.37 1 35.96 ? C11 MUB 1453 A 1 HETATM 12 O O1 MUB . . . D 4 15.373 -26.187 -31.397 1 34.47 ? O1 MUB 1453 A 1 HETATM 13 O O3 MUB . . . D 4 14.488 -25.969 -27.28 1 33.54 ? O3 MUB 1453 A 1 HETATM 14 O O4 MUB . . . D 4 15.885 -28.162 -27.706 1 39.94 ? O4 MUB 1453 A 1 HETATM 15 O O5 MUB . . . D 4 14.185 -28.055 -30.869 1 33.8 ? O5 MUB 1453 A 1 HETATM 16 O O6 MUB . . . D 4 14.378 -30.367 -29.82 1 40.68 ? O6 MUB 1453 A 1 HETATM 17 O O7 MUB . . . D 4 11.818 -24.257 -28.527 1 31.36 ? O7 MUB 1453 A 1 HETATM 18 O O10 MUB . . . D 4 14.016 -23.173 -25.099 1 30.36 ? O10 MUB 1453 A 1 HETATM 19 N N2 MUB . . . D 4 13.588 -24.545 -29.904 1 31.74 ? N2 MUB 1453 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #