data_4CVM # _model_server_result.job_id xKRtVWBemcHuLQNmBR9c-Q _model_server_result.datetime_utc '2024-11-05 00:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1455}' # _entry.id 4CVM # _exptl.entry_id 4CVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GAMMA-D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CVM _cell.length_a 58.54 _cell.length_b 86.05 _cell.length_c 88.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C PB UDP . A UDP 1452 1_555 D O1 MUB . A MUB 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? covale ? covale2 D C10 MUB . A MUB 1453 1_555 B N ALA . A ALA 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ALA . A ALA 1454 1_555 E N FGA . A FGA 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? metalc ? metalc1 A OG1 THR 114 A THR 114 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc2 A OG1 THR 114 A THR 114 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A OD1 ASN 140 A ASN 140 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A OD1 ASN 140 A ASN 140 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 A OE2 GLU 164 A GLU 164 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 F O2A ANP . A ANP 1456 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc7 F O2B ANP . A ANP 1456 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc8 F O2G ANP . A ANP 1456 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 F O2B ANP . A ANP 1456 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id FGA _chem_comp.mon_nstd_flag . _chem_comp.name 'GAMMA-D-GLUTAMIC ACID' _chem_comp.type 'd-gamma-peptide, c-delta linking' _chem_comp.pdbx_synonyms 'D-GLUTAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA FGA sing 133 n n N H FGA sing 134 n n N H2 FGA sing 135 n n CA C FGA sing 136 n n CA CB FGA sing 137 n n CA HA FGA sing 138 n n C O FGA doub 139 n n C OXT FGA sing 140 n n CB CG FGA sing 141 n n CB HB2 FGA sing 142 n n CB HB3 FGA sing 143 n n CG CD FGA sing 144 n n CG HG2 FGA sing 145 n n CG HG3 FGA sing 146 n n CD OE1 FGA doub 147 n n CD OE2 FGA sing 148 n n OE2 HE2 FGA sing 149 n n OXT HXT FGA sing 150 n n # _atom_sites.entry_id 4CVM _atom_sites.fract_transf_matrix[1][1] 0.017082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 1454 1454 ALA ALA . C 3 UDP A 1 1452 1452 UDP UDP . D 4 MUB A 1 1453 1453 MUB MUB . E 5 FGA A 1 1455 1455 FGA FGA . F 6 ANP A 1 1456 1456 ANP ANP . G 7 MG A 1 1457 1457 MG MG . H 7 MG A 1 1458 1458 MG MG . I 8 HOH A 1 2001 2001 HOH HOH . I 8 HOH A 2 2002 2002 HOH HOH . I 8 HOH A 3 2003 2003 HOH HOH . I 8 HOH A 4 2004 2004 HOH HOH . I 8 HOH A 5 2005 2005 HOH HOH . I 8 HOH A 6 2006 2006 HOH HOH . I 8 HOH A 7 2007 2007 HOH HOH . I 8 HOH A 8 2008 2008 HOH HOH . I 8 HOH A 9 2009 2009 HOH HOH . I 8 HOH A 10 2010 2010 HOH HOH . I 8 HOH A 11 2011 2011 HOH HOH . I 8 HOH A 12 2012 2012 HOH HOH . I 8 HOH A 13 2013 2013 HOH HOH . I 8 HOH A 14 2014 2014 HOH HOH . I 8 HOH A 15 2015 2015 HOH HOH . I 8 HOH A 16 2016 2016 HOH HOH . I 8 HOH A 17 2017 2017 HOH HOH . I 8 HOH A 18 2018 2018 HOH HOH . I 8 HOH A 19 2019 2019 HOH HOH . I 8 HOH A 20 2020 2020 HOH HOH . I 8 HOH A 21 2021 2021 HOH HOH . I 8 HOH A 22 2022 2022 HOH HOH . I 8 HOH A 23 2023 2023 HOH HOH . I 8 HOH A 24 2024 2024 HOH HOH . I 8 HOH A 25 2025 2025 HOH HOH . I 8 HOH A 26 2026 2026 HOH HOH . I 8 HOH A 27 2027 2027 HOH HOH . I 8 HOH A 28 2028 2028 HOH HOH . I 8 HOH A 29 2029 2029 HOH HOH . I 8 HOH A 30 2030 2030 HOH HOH . I 8 HOH A 31 2031 2031 HOH HOH . I 8 HOH A 32 2032 2032 HOH HOH . I 8 HOH A 33 2033 2033 HOH HOH . I 8 HOH A 34 2034 2034 HOH HOH . I 8 HOH A 35 2035 2035 HOH HOH . I 8 HOH A 36 2036 2036 HOH HOH . I 8 HOH A 37 2037 2037 HOH HOH . I 8 HOH A 38 2038 2038 HOH HOH . I 8 HOH A 39 2039 2039 HOH HOH . I 8 HOH A 40 2040 2040 HOH HOH . I 8 HOH A 41 2041 2041 HOH HOH . I 8 HOH A 42 2042 2042 HOH HOH . I 8 HOH A 43 2043 2043 HOH HOH . I 8 HOH A 44 2044 2044 HOH HOH . I 8 HOH A 45 2045 2045 HOH HOH . I 8 HOH A 46 2046 2046 HOH HOH . I 8 HOH A 47 2047 2047 HOH HOH . I 8 HOH A 48 2048 2048 HOH HOH . I 8 HOH A 49 2049 2049 HOH HOH . I 8 HOH A 50 2050 2050 HOH HOH . I 8 HOH A 51 2051 2051 HOH HOH . I 8 HOH A 52 2052 2052 HOH HOH . I 8 HOH A 53 2053 2053 HOH HOH . I 8 HOH A 54 2054 2054 HOH HOH . I 8 HOH A 55 2055 2055 HOH HOH . I 8 HOH A 56 2056 2056 HOH HOH . I 8 HOH A 57 2057 2057 HOH HOH . I 8 HOH A 58 2058 2058 HOH HOH . I 8 HOH A 59 2059 2059 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N FGA . . . E 5 13.846 -26.059 -22.885 1 34.78 ? N FGA 1455 A 1 HETATM 2 C CA FGA . . . E 5 14.385 -26.485 -21.576 1 41.49 ? CA FGA 1455 A 1 HETATM 3 C C FGA . . . E 5 15.292 -27.685 -21.783 1 48.2 ? C FGA 1455 A 1 HETATM 4 O O FGA . . . E 5 16.473 -27.439 -22.006 1 47.81 ? O FGA 1455 A 1 HETATM 5 C CB FGA . . . E 5 15.115 -25.359 -20.816 1 39.49 ? CB FGA 1455 A 1 HETATM 6 O OXT FGA . . . E 5 14.751 -28.819 -21.76 1 61.54 ? OXT FGA 1455 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #