data_4CVM # _model_server_result.job_id 50j-B5Cfv9c4ZdSn3l0Fsw _model_server_result.datetime_utc '2024-11-05 00:20:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1456}' # _entry.id 4CVM # _exptl.entry_id 4CVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CVM _cell.length_a 58.54 _cell.length_b 86.05 _cell.length_c 88.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C PB UDP . A UDP 1452 1_555 D O1 MUB . A MUB 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? covale ? covale2 D C10 MUB . A MUB 1453 1_555 B N ALA . A ALA 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ALA . A ALA 1454 1_555 E N FGA . A FGA 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? metalc ? metalc1 A OG1 THR 114 A THR 114 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc2 A OG1 THR 114 A THR 114 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A OD1 ASN 140 A ASN 140 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A OD1 ASN 140 A ASN 140 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 A OE2 GLU 164 A GLU 164 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 F O2A ANP . A ANP 1456 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc7 F O2B ANP . A ANP 1456 1_555 G MG MG . A MG 1457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc8 F O2G ANP . A ANP 1456 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 F O2B ANP . A ANP 1456 1_555 H MG MG . A MG 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4CVM _atom_sites.fract_transf_matrix[1][1] 0.017082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 1454 1454 ALA ALA . C 3 UDP A 1 1452 1452 UDP UDP . D 4 MUB A 1 1453 1453 MUB MUB . E 5 FGA A 1 1455 1455 FGA FGA . F 6 ANP A 1 1456 1456 ANP ANP . G 7 MG A 1 1457 1457 MG MG . H 7 MG A 1 1458 1458 MG MG . I 8 HOH A 1 2001 2001 HOH HOH . I 8 HOH A 2 2002 2002 HOH HOH . I 8 HOH A 3 2003 2003 HOH HOH . I 8 HOH A 4 2004 2004 HOH HOH . I 8 HOH A 5 2005 2005 HOH HOH . I 8 HOH A 6 2006 2006 HOH HOH . I 8 HOH A 7 2007 2007 HOH HOH . I 8 HOH A 8 2008 2008 HOH HOH . I 8 HOH A 9 2009 2009 HOH HOH . I 8 HOH A 10 2010 2010 HOH HOH . I 8 HOH A 11 2011 2011 HOH HOH . I 8 HOH A 12 2012 2012 HOH HOH . I 8 HOH A 13 2013 2013 HOH HOH . I 8 HOH A 14 2014 2014 HOH HOH . I 8 HOH A 15 2015 2015 HOH HOH . I 8 HOH A 16 2016 2016 HOH HOH . I 8 HOH A 17 2017 2017 HOH HOH . I 8 HOH A 18 2018 2018 HOH HOH . I 8 HOH A 19 2019 2019 HOH HOH . I 8 HOH A 20 2020 2020 HOH HOH . I 8 HOH A 21 2021 2021 HOH HOH . I 8 HOH A 22 2022 2022 HOH HOH . I 8 HOH A 23 2023 2023 HOH HOH . I 8 HOH A 24 2024 2024 HOH HOH . I 8 HOH A 25 2025 2025 HOH HOH . I 8 HOH A 26 2026 2026 HOH HOH . I 8 HOH A 27 2027 2027 HOH HOH . I 8 HOH A 28 2028 2028 HOH HOH . I 8 HOH A 29 2029 2029 HOH HOH . I 8 HOH A 30 2030 2030 HOH HOH . I 8 HOH A 31 2031 2031 HOH HOH . I 8 HOH A 32 2032 2032 HOH HOH . I 8 HOH A 33 2033 2033 HOH HOH . I 8 HOH A 34 2034 2034 HOH HOH . I 8 HOH A 35 2035 2035 HOH HOH . I 8 HOH A 36 2036 2036 HOH HOH . I 8 HOH A 37 2037 2037 HOH HOH . I 8 HOH A 38 2038 2038 HOH HOH . I 8 HOH A 39 2039 2039 HOH HOH . I 8 HOH A 40 2040 2040 HOH HOH . I 8 HOH A 41 2041 2041 HOH HOH . I 8 HOH A 42 2042 2042 HOH HOH . I 8 HOH A 43 2043 2043 HOH HOH . I 8 HOH A 44 2044 2044 HOH HOH . I 8 HOH A 45 2045 2045 HOH HOH . I 8 HOH A 46 2046 2046 HOH HOH . I 8 HOH A 47 2047 2047 HOH HOH . I 8 HOH A 48 2048 2048 HOH HOH . I 8 HOH A 49 2049 2049 HOH HOH . I 8 HOH A 50 2050 2050 HOH HOH . I 8 HOH A 51 2051 2051 HOH HOH . I 8 HOH A 52 2052 2052 HOH HOH . I 8 HOH A 53 2053 2053 HOH HOH . I 8 HOH A 54 2054 2054 HOH HOH . I 8 HOH A 55 2055 2055 HOH HOH . I 8 HOH A 56 2056 2056 HOH HOH . I 8 HOH A 57 2057 2057 HOH HOH . I 8 HOH A 58 2058 2058 HOH HOH . I 8 HOH A 59 2059 2059 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 6 18.561 -27.797 -14.488 1 35.25 ? PG ANP 1456 A 1 HETATM 2 O O1G ANP . . . F 6 18.794 -26.36 -14.084 1 35.74 ? O1G ANP 1456 A 1 HETATM 3 O O2G ANP . . . F 6 17.077 -27.888 -14.808 1 40.35 ? O2G ANP 1456 A 1 HETATM 4 O O3G ANP . . . F 6 19.505 -28.495 -15.379 1 33.48 ? O3G ANP 1456 A 1 HETATM 5 P PB ANP . . . F 6 17.974 -29.142 -11.857 1 26.73 ? PB ANP 1456 A 1 HETATM 6 O O1B ANP . . . F 6 17.884 -28.016 -10.867 1 26.71 ? O1B ANP 1456 A 1 HETATM 7 O O2B ANP . . . F 6 16.675 -29.662 -12.51 1 28.5 ? O2B ANP 1456 A 1 HETATM 8 N N3B ANP . . . F 6 19.08 -28.71 -13.11 1 31.73 ? N3B ANP 1456 A 1 HETATM 9 P PA ANP . . . F 6 18.454 -31.932 -11.103 1 29.38 ? PA ANP 1456 A 1 HETATM 10 O O1A ANP . . . F 6 17.486 -32.357 -9.997 1 28.99 ? O1A ANP 1456 A 1 HETATM 11 O O2A ANP . . . F 6 18.215 -32.37 -12.563 1 29.19 ? O2A ANP 1456 A 1 HETATM 12 O O3A ANP . . . F 6 18.726 -30.334 -11.031 1 27.58 ? O3A ANP 1456 A 1 HETATM 13 O O5' ANP . . . F 6 19.859 -32.57 -10.66 1 29.48 ? O5' ANP 1456 A 1 HETATM 14 C C5' ANP . . . F 6 21.047 -32.279 -11.446 1 31.85 ? C5' ANP 1456 A 1 HETATM 15 C C4' ANP . . . F 6 22.317 -32.495 -10.637 1 29.81 ? C4' ANP 1456 A 1 HETATM 16 O O4' ANP . . . F 6 22.516 -31.447 -9.685 1 28.92 ? O4' ANP 1456 A 1 HETATM 17 C C3' ANP . . . F 6 22.309 -33.795 -9.83 1 35.98 ? C3' ANP 1456 A 1 HETATM 18 O O3' ANP . . . F 6 22.684 -34.983 -10.565 1 40.2 ? O3' ANP 1456 A 1 HETATM 19 C C2' ANP . . . F 6 23.282 -33.464 -8.751 1 34.93 ? C2' ANP 1456 A 1 HETATM 20 O O2' ANP . . . F 6 24.618 -33.592 -9.257 1 41.13 ? O2' ANP 1456 A 1 HETATM 21 C C1' ANP . . . F 6 23.046 -31.977 -8.459 1 31.42 ? C1' ANP 1456 A 1 HETATM 22 N N9 ANP . . . F 6 22.06 -31.711 -7.389 1 29.23 ? N9 ANP 1456 A 1 HETATM 23 C C8 ANP . . . F 6 20.738 -32.084 -7.397 1 26.37 ? C8 ANP 1456 A 1 HETATM 24 N N7 ANP . . . F 6 20.122 -31.607 -6.268 1 26.48 ? N7 ANP 1456 A 1 HETATM 25 C C5 ANP . . . F 6 21.036 -30.894 -5.58 1 25.68 ? C5 ANP 1456 A 1 HETATM 26 C C6 ANP . . . F 6 21.078 -30.153 -4.312 1 27.53 ? C6 ANP 1456 A 1 HETATM 27 N N6 ANP . . . F 6 19.952 -30.057 -3.574 1 27.4 ? N6 ANP 1456 A 1 HETATM 28 N N1 ANP . . . F 6 22.264 -29.592 -3.918 1 26.78 ? N1 ANP 1456 A 1 HETATM 29 C C2 ANP . . . F 6 23.383 -29.659 -4.658 1 28.47 ? C2 ANP 1456 A 1 HETATM 30 N N3 ANP . . . F 6 23.413 -30.361 -5.799 1 26.73 ? N3 ANP 1456 A 1 HETATM 31 C C4 ANP . . . F 6 22.307 -30.961 -6.312 1 26.78 ? C4 ANP 1456 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #