data_4CVQ # _model_server_result.job_id ZYowdnYuxduTQHXv29n8hw _model_server_result.datetime_utc '2024-12-22 06:06:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1240}' # _entry.id 4CVQ # _exptl.entry_id 4CVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CVQ _cell.length_a 59.78 _cell.length_b 152.13 _cell.length_c 174.24 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 266 A LYS 240 1_555 C C4A PLP . A PLP 1240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B NZ LYS 266 B LYS 240 1_555 E C4A PLP . B PLP 1240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 279 n y N1 C6 PLP sing 280 n y C2 C2A PLP sing 281 n n C2 C3 PLP sing 282 n y C2A H2A1 PLP sing 283 n n C2A H2A2 PLP sing 284 n n C2A H2A3 PLP sing 285 n n C3 O3 PLP sing 286 n n C3 C4 PLP doub 287 n y O3 HO3 PLP sing 288 n n C4 C4A PLP sing 289 n n C4 C5 PLP sing 290 n y C4A O4A PLP doub 291 n n C4A H4A PLP sing 292 n n C5 C6 PLP doub 293 n y C5 C5A PLP sing 294 n n C6 H6 PLP sing 295 n n C5A O4P PLP sing 296 n n C5A H5A1 PLP sing 297 n n C5A H5A2 PLP sing 298 n n O4P P PLP sing 299 n n P O1P PLP doub 300 n n P O2P PLP sing 301 n n P O3P PLP sing 302 n n O2P HOP2 PLP sing 303 n n O3P HOP3 PLP sing 304 n n # _atom_sites.entry_id 4CVQ _atom_sites.fract_transf_matrix[1][1] 0.016728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 1240 1240 PLP PLP . D 3 ACT A 1 1405 1405 ACT ACT . E 2 PLP B 1 1240 1240 PLP PLP . F 3 ACT B 1 1406 1406 ACT ACT . G 4 GOL B 1 1407 1407 GOL GOL . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . H 5 HOH A 31 2031 2031 HOH HOH . H 5 HOH A 32 2032 2032 HOH HOH . H 5 HOH A 33 2033 2033 HOH HOH . H 5 HOH A 34 2034 2034 HOH HOH . H 5 HOH A 35 2035 2035 HOH HOH . H 5 HOH A 36 2036 2036 HOH HOH . H 5 HOH A 37 2037 2037 HOH HOH . H 5 HOH A 38 2038 2038 HOH HOH . H 5 HOH A 39 2039 2039 HOH HOH . H 5 HOH A 40 2040 2040 HOH HOH . H 5 HOH A 41 2041 2041 HOH HOH . H 5 HOH A 42 2042 2042 HOH HOH . H 5 HOH A 43 2043 2043 HOH HOH . H 5 HOH A 44 2044 2044 HOH HOH . H 5 HOH A 45 2045 2045 HOH HOH . H 5 HOH A 46 2046 2046 HOH HOH . H 5 HOH A 47 2047 2047 HOH HOH . H 5 HOH A 48 2048 2048 HOH HOH . H 5 HOH A 49 2049 2049 HOH HOH . H 5 HOH A 50 2050 2050 HOH HOH . H 5 HOH A 51 2051 2051 HOH HOH . H 5 HOH A 52 2052 2052 HOH HOH . H 5 HOH A 53 2053 2053 HOH HOH . H 5 HOH A 54 2054 2054 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . I 5 HOH B 6 2006 2006 HOH HOH . I 5 HOH B 7 2007 2007 HOH HOH . I 5 HOH B 8 2008 2008 HOH HOH . I 5 HOH B 9 2009 2009 HOH HOH . I 5 HOH B 10 2010 2010 HOH HOH . I 5 HOH B 11 2011 2011 HOH HOH . I 5 HOH B 12 2012 2012 HOH HOH . I 5 HOH B 13 2013 2013 HOH HOH . I 5 HOH B 14 2014 2014 HOH HOH . I 5 HOH B 15 2015 2015 HOH HOH . I 5 HOH B 16 2016 2016 HOH HOH . I 5 HOH B 17 2017 2017 HOH HOH . I 5 HOH B 18 2018 2018 HOH HOH . I 5 HOH B 19 2019 2019 HOH HOH . I 5 HOH B 20 2020 2020 HOH HOH . I 5 HOH B 21 2021 2021 HOH HOH . I 5 HOH B 22 2022 2022 HOH HOH . I 5 HOH B 23 2023 2023 HOH HOH . I 5 HOH B 24 2024 2024 HOH HOH . I 5 HOH B 25 2025 2025 HOH HOH . I 5 HOH B 26 2026 2026 HOH HOH . I 5 HOH B 27 2027 2027 HOH HOH . I 5 HOH B 28 2028 2028 HOH HOH . I 5 HOH B 29 2029 2029 HOH HOH . I 5 HOH B 30 2030 2030 HOH HOH . I 5 HOH B 31 2031 2031 HOH HOH . I 5 HOH B 32 2032 2032 HOH HOH . I 5 HOH B 33 2033 2033 HOH HOH . I 5 HOH B 34 2034 2034 HOH HOH . I 5 HOH B 35 2035 2035 HOH HOH . I 5 HOH B 36 2036 2036 HOH HOH . I 5 HOH B 37 2037 2037 HOH HOH . I 5 HOH B 38 2038 2038 HOH HOH . I 5 HOH B 39 2039 2039 HOH HOH . I 5 HOH B 40 2040 2040 HOH HOH . I 5 HOH B 41 2041 2041 HOH HOH . I 5 HOH B 42 2042 2042 HOH HOH . I 5 HOH B 43 2043 2043 HOH HOH . I 5 HOH B 44 2044 2044 HOH HOH . I 5 HOH B 45 2045 2045 HOH HOH . I 5 HOH B 46 2046 2046 HOH HOH . I 5 HOH B 47 2047 2047 HOH HOH . I 5 HOH B 48 2048 2048 HOH HOH . I 5 HOH B 49 2049 2049 HOH HOH . I 5 HOH B 50 2050 2050 HOH HOH . I 5 HOH B 51 2051 2051 HOH HOH . I 5 HOH B 52 2052 2052 HOH HOH . I 5 HOH B 53 2053 2053 HOH HOH . I 5 HOH B 54 2054 2054 HOH HOH . I 5 HOH B 55 2055 2055 HOH HOH . I 5 HOH B 56 2056 2056 HOH HOH . I 5 HOH B 57 2057 2057 HOH HOH . I 5 HOH B 58 2058 2058 HOH HOH . I 5 HOH B 59 2059 2059 HOH HOH . I 5 HOH B 60 2060 2060 HOH HOH . I 5 HOH B 61 2061 2061 HOH HOH . I 5 HOH B 62 2062 2062 HOH HOH . I 5 HOH B 63 2063 2063 HOH HOH . I 5 HOH B 64 2064 2064 HOH HOH . I 5 HOH B 65 2065 2065 HOH HOH . I 5 HOH B 66 2066 2066 HOH HOH . I 5 HOH B 67 2067 2067 HOH HOH . I 5 HOH B 68 2068 2068 HOH HOH . I 5 HOH B 69 2069 2069 HOH HOH . I 5 HOH B 70 2070 2070 HOH HOH . I 5 HOH B 71 2071 2071 HOH HOH . I 5 HOH B 72 2072 2072 HOH HOH . I 5 HOH B 73 2073 2073 HOH HOH . I 5 HOH B 74 2074 2074 HOH HOH . I 5 HOH B 75 2075 2075 HOH HOH . I 5 HOH B 76 2076 2076 HOH HOH . I 5 HOH B 77 2077 2077 HOH HOH . I 5 HOH B 78 2078 2078 HOH HOH . I 5 HOH B 79 2079 2079 HOH HOH . I 5 HOH B 80 2080 2080 HOH HOH . I 5 HOH B 81 2081 2081 HOH HOH . I 5 HOH B 82 2082 2082 HOH HOH . I 5 HOH B 83 2083 2083 HOH HOH . I 5 HOH B 84 2084 2084 HOH HOH . I 5 HOH B 85 2085 2085 HOH HOH . I 5 HOH B 86 2086 2086 HOH HOH . I 5 HOH B 87 2087 2087 HOH HOH . I 5 HOH B 88 2088 2088 HOH HOH . I 5 HOH B 89 2089 2089 HOH HOH . I 5 HOH B 90 2090 2090 HOH HOH . I 5 HOH B 91 2091 2091 HOH HOH . I 5 HOH B 92 2092 2092 HOH HOH . I 5 HOH B 93 2093 2093 HOH HOH . I 5 HOH B 94 2094 2094 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 2 15.535 -4.162 24.07 1 42.36 ? N1 PLP 1240 A 1 HETATM 2 C C2 PLP . . . C 2 14.736 -5.186 24.456 1 43.28 ? C2 PLP 1240 A 1 HETATM 3 C C2A PLP . . . C 2 14.992 -6.578 23.957 1 43.36 ? C2A PLP 1240 A 1 HETATM 4 C C3 PLP . . . C 2 13.673 -4.938 25.321 1 45 ? C3 PLP 1240 A 1 HETATM 5 O O3 PLP . . . C 2 12.865 -5.97 25.709 1 47.02 ? O3 PLP 1240 A 1 HETATM 6 C C4 PLP . . . C 2 13.427 -3.656 25.788 1 44.97 ? C4 PLP 1240 A 1 HETATM 7 C C4A PLP . . . C 2 12.246 -3.461 26.738 1 46 ? C4A PLP 1240 A 1 HETATM 8 C C5 PLP . . . C 2 14.263 -2.612 25.378 1 43.79 ? C5 PLP 1240 A 1 HETATM 9 C C6 PLP . . . C 2 15.326 -2.894 24.506 1 42.74 ? C6 PLP 1240 A 1 HETATM 10 C C5A PLP . . . C 2 14.045 -1.213 25.846 1 42.67 ? C5A PLP 1240 A 1 HETATM 11 O O4P PLP . . . C 2 14.723 -0.961 27.026 1 43.08 ? O4P PLP 1240 A 1 HETATM 12 P P PLP . . . C 2 14.737 0.483 27.603 1 35.51 ? P PLP 1240 A 1 HETATM 13 O O1P PLP . . . C 2 13.513 0.71 28.455 1 34.98 ? O1P PLP 1240 A 1 HETATM 14 O O2P PLP . . . C 2 15.978 0.645 28.448 1 37.43 ? O2P PLP 1240 A 1 HETATM 15 O O3P PLP . . . C 2 14.756 1.48 26.463 1 32.74 ? O3P PLP 1240 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #