data_4CWB # _model_server_result.job_id Rx_KxHURWd0j4wwFwxu-wg _model_server_result.datetime_utc '2024-11-27 02:47:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1163}' # _entry.id 4CWB # _exptl.entry_id 4CWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.42 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-8-[2-oxo-2-(4-phenylphenyl)ethyl]sulfanyl-1,9-dihydropurin-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CWB _cell.length_a 83.817 _cell.length_b 83.817 _cell.length_c 52.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 95 1_555 B MG MG . A MG 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 A OD1 ASP 98 A ASP 95 1_555 C MG MG . A MG 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 A OD2 ASP 100 A ASP 97 1_555 B MG MG . A MG 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc4 A OD1 ASP 100 A ASP 97 1_555 C MG MG . A MG 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 B MG MG . A MG 1159 1_555 D O1B APC . A APC 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 B MG MG . A MG 1159 1_555 D O3G APC . A APC 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc7 B MG MG . A MG 1159 1_555 G O HOH . A HOH 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc8 B MG MG . A MG 1159 1_555 G O HOH . A HOH 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc9 C MG MG . A MG 1160 1_555 D O1B APC . A APC 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc10 C MG MG . A MG 1160 1_555 D O1A APC . A APC 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc11 C MG MG . A MG 1160 1_555 G O HOH . A HOH 2065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc12 C MG MG . A MG 1160 1_555 G O HOH . A HOH 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C19 H15 N5 O2 S' _chem_comp.formula_weight 377.42 _chem_comp.id X6L _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-8-[2-oxo-2-(4-phenylphenyl)ethyl]sulfanyl-1,9-dihydropurin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 X6L sing 430 n y C22 C23 X6L doub 431 n y C21 C20 X6L doub 432 n y C23 C24 X6L sing 433 n y C20 C19 X6L sing 434 n y C24 C19 X6L doub 435 n y C15 C14 X6L sing 436 n y C15 C16 X6L doub 437 n y C17 C18 X6L doub 438 n y C17 C16 X6L sing 439 n y C14 C13 X6L doub 440 n y C18 C13 X6L sing 441 n y C19 C16 X6L sing 442 n n C13 C11 X6L sing 443 n n C5 C4 X6L doub 444 n y C5 C25 X6L sing 445 n n C5 N6 X6L sing 446 n y C4 N3 X6L sing 447 n n C4 N8 X6L sing 448 n y C7 N6 X6L doub 449 n y C7 N8 X6L sing 450 n y C7 S9 X6L sing 451 n n C25 N27 X6L sing 452 n n C25 O26 X6L doub 453 n n C2 N3 X6L doub 454 n n C2 N27 X6L sing 455 n n C2 N1 X6L sing 456 n n C11 C10 X6L sing 457 n n C11 O12 X6L doub 458 n n C10 S9 X6L sing 459 n n C22 H22 X6L sing 460 n n C21 H21 X6L sing 461 n n C23 H23 X6L sing 462 n n C20 H20 X6L sing 463 n n C24 H24 X6L sing 464 n n C15 H15 X6L sing 465 n n C14 H14 X6L sing 466 n n C17 H17 X6L sing 467 n n C18 H18 X6L sing 468 n n N8 H8 X6L sing 469 n n N27 H27 X6L sing 470 n n N1 H11N X6L sing 471 n n N1 H12N X6L sing 472 n n C10 H101 X6L sing 473 n n C10 H102 X6L sing 474 n n # _atom_sites.entry_id 4CWB _atom_sites.fract_transf_matrix[1][1] 0.011931 _atom_sites.fract_transf_matrix[1][2] 0.006888 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1159 1159 MG MG . C 2 MG A 1 1160 1160 MG MG . D 3 APC A 1 1161 1161 APC APC . E 4 NO3 A 1 1162 1162 NO3 NO3 . F 5 X6L A 1 1163 1163 X6L X6L . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . G 6 HOH A 84 2084 2084 HOH HOH . G 6 HOH A 85 2085 2085 HOH HOH . G 6 HOH A 86 2086 2086 HOH HOH . G 6 HOH A 87 2087 2087 HOH HOH . G 6 HOH A 88 2088 2088 HOH HOH . G 6 HOH A 89 2089 2089 HOH HOH . G 6 HOH A 90 2090 2090 HOH HOH . G 6 HOH A 91 2091 2091 HOH HOH . G 6 HOH A 92 2092 2092 HOH HOH . G 6 HOH A 93 2093 2093 HOH HOH . G 6 HOH A 94 2094 2094 HOH HOH . G 6 HOH A 95 2095 2095 HOH HOH . G 6 HOH A 96 2096 2096 HOH HOH . G 6 HOH A 97 2097 2097 HOH HOH . G 6 HOH A 98 2098 2098 HOH HOH . G 6 HOH A 99 2099 2099 HOH HOH . G 6 HOH A 100 2100 2100 HOH HOH . G 6 HOH A 101 2101 2101 HOH HOH . G 6 HOH A 102 2102 2102 HOH HOH . G 6 HOH A 103 2103 2103 HOH HOH . G 6 HOH A 104 2104 2104 HOH HOH . G 6 HOH A 105 2105 2105 HOH HOH . G 6 HOH A 106 2106 2106 HOH HOH . G 6 HOH A 107 2107 2107 HOH HOH . G 6 HOH A 108 2108 2108 HOH HOH . G 6 HOH A 109 2109 2109 HOH HOH . G 6 HOH A 110 2110 2110 HOH HOH . G 6 HOH A 111 2111 2111 HOH HOH . G 6 HOH A 112 2112 2112 HOH HOH . G 6 HOH A 113 2113 2113 HOH HOH . G 6 HOH A 114 2114 2114 HOH HOH . G 6 HOH A 115 2115 2115 HOH HOH . G 6 HOH A 116 2116 2116 HOH HOH . G 6 HOH A 117 2117 2117 HOH HOH . G 6 HOH A 118 2118 2118 HOH HOH . G 6 HOH A 119 2119 2119 HOH HOH . G 6 HOH A 120 2120 2120 HOH HOH . G 6 HOH A 121 2121 2121 HOH HOH . G 6 HOH A 122 2122 2122 HOH HOH . G 6 HOH A 123 2123 2123 HOH HOH . G 6 HOH A 124 2124 2124 HOH HOH . G 6 HOH A 125 2125 2125 HOH HOH . G 6 HOH A 126 2126 2126 HOH HOH . G 6 HOH A 127 2127 2127 HOH HOH . G 6 HOH A 128 2128 2128 HOH HOH . G 6 HOH A 129 2129 2129 HOH HOH . G 6 HOH A 130 2130 2130 HOH HOH . G 6 HOH A 131 2131 2131 HOH HOH . G 6 HOH A 132 2132 2132 HOH HOH . G 6 HOH A 133 2133 2133 HOH HOH . G 6 HOH A 134 2134 2134 HOH HOH . G 6 HOH A 135 2135 2135 HOH HOH . G 6 HOH A 136 2136 2136 HOH HOH . G 6 HOH A 137 2137 2137 HOH HOH . G 6 HOH A 138 2138 2138 HOH HOH . G 6 HOH A 139 2139 2139 HOH HOH . G 6 HOH A 140 2140 2140 HOH HOH . G 6 HOH A 141 2141 2141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 X6L . . . F 5 49.374 -16.294 -24.344 1 12.94 ? C22 X6L 1163 A 1 HETATM 2 C C21 X6L . . . F 5 49.591 -15.183 -23.565 1 12.77 ? C21 X6L 1163 A 1 HETATM 3 C C23 X6L . . . F 5 48.098 -16.549 -24.774 1 12.6 ? C23 X6L 1163 A 1 HETATM 4 C C20 X6L . . . F 5 48.542 -14.359 -23.223 1 12.69 ? C20 X6L 1163 A 1 HETATM 5 C C24 X6L . . . F 5 47.054 -15.723 -24.433 1 12.82 ? C24 X6L 1163 A 1 HETATM 6 C C15 X6L . . . F 5 45.003 -13.653 -24.09 1 11.09 ? C15 X6L 1163 A 1 HETATM 7 C C17 X6L . . . F 5 46.016 -13.221 -22.001 1 11.65 ? C17 X6L 1163 A 1 HETATM 8 C C14 X6L . . . F 5 43.878 -12.974 -23.672 1 11.42 ? C14 X6L 1163 A 1 HETATM 9 C C18 X6L . . . F 5 44.898 -12.554 -21.574 1 11.14 ? C18 X6L 1163 A 1 HETATM 10 C C19 X6L . . . F 5 47.257 -14.598 -23.649 1 12.13 ? C19 X6L 1163 A 1 HETATM 11 C C16 X6L . . . F 5 46.096 -13.796 -23.266 1 11.72 ? C16 X6L 1163 A 1 HETATM 12 C C13 X6L . . . F 5 43.815 -12.427 -22.414 1 11.38 ? C13 X6L 1163 A 1 HETATM 13 C C5 X6L . . . F 5 42.966 -7.765 -20.736 1 9.08 ? C5 X6L 1163 A 1 HETATM 14 C C4 X6L . . . F 5 44.161 -7.754 -21.374 1 8.22 ? C4 X6L 1163 A 1 HETATM 15 C C7 X6L . . . F 5 42.684 -8.9 -22.49 1 9.73 ? C7 X6L 1163 A 1 HETATM 16 C C25 X6L . . . F 5 42.847 -7.036 -19.505 1 9.1 ? C25 X6L 1163 A 1 HETATM 17 C C2 X6L . . . F 5 45.188 -6.485 -19.927 1 8.48 ? C2 X6L 1163 A 1 HETATM 18 C C11 X6L . . . F 5 42.604 -11.739 -21.933 1 11.38 ? C11 X6L 1163 A 1 HETATM 19 C C10 X6L . . . F 5 41.526 -11.26 -22.851 1 11.69 ? C10 X6L 1163 A 1 HETATM 20 N N6 X6L . . . F 5 42.026 -8.492 -21.431 1 9.77 ? N6 X6L 1163 A 1 HETATM 21 N N3 X6L . . . F 5 45.302 -7.151 -21.04 1 8.24 ? N3 X6L 1163 A 1 HETATM 22 N N8 X6L . . . F 5 43.987 -8.51 -22.501 1 8.98 ? N8 X6L 1163 A 1 HETATM 23 N N27 X6L . . . F 5 44.042 -6.413 -19.177 1 8.66 ? N27 X6L 1163 A 1 HETATM 24 N N1 X6L . . . F 5 46.212 -5.779 -19.408 1 9.73 ? N1 X6L 1163 A 1 HETATM 25 O O26 X6L . . . F 5 41.845 -6.952 -18.826 1 10.77 ? O26 X6L 1163 A 1 HETATM 26 O O12 X6L . . . F 5 42.436 -11.576 -20.747 1 11.53 ? O12 X6L 1163 A 1 HETATM 27 S S9 X6L . . . F 5 42.055 -9.856 -23.812 1 11.3 ? S9 X6L 1163 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #