data_4CX7 # _model_server_result.job_id kdBMxjM00qn5k9Svzvzjog _model_server_result.datetime_utc '2024-11-22 10:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":550}' # _entry.id 4CX7 # _exptl.entry_id 4CX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CX7 _cell.length_a 189.223 _cell.length_b 189.223 _cell.length_c 232.773 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 R N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 127 A CYS 200 1_555 E FE HEM . A HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 B SG CYS 127 B CYS 200 1_555 L FE HEM . B HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 C SG CYS 127 C CYS 200 1_555 R FE HEM . C HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 D SG CYS 127 D CYS 200 1_555 X FE HEM . D HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 175 n n CHA C4D HEM doub 176 n n CHA HHA HEM sing 177 n n CHB C4A HEM sing 178 n n CHB C1B HEM doub 179 n n CHB HHB HEM sing 180 n n CHC C4B HEM sing 181 n n CHC C1C HEM doub 182 n n CHC HHC HEM sing 183 n n CHD C4C HEM doub 184 n n CHD C1D HEM sing 185 n n CHD HHD HEM sing 186 n n C1A C2A HEM doub 187 n y C1A NA HEM sing 188 n y C2A C3A HEM sing 189 n y C2A CAA HEM sing 190 n n C3A C4A HEM doub 191 n y C3A CMA HEM sing 192 n n C4A NA HEM sing 193 n y CMA HMA HEM sing 194 n n CMA HMAA HEM sing 195 n n CMA HMAB HEM sing 196 n n CAA CBA HEM sing 197 n n CAA HAA HEM sing 198 n n CAA HAAA HEM sing 199 n n CBA CGA HEM sing 200 n n CBA HBA HEM sing 201 n n CBA HBAA HEM sing 202 n n CGA O1A HEM doub 203 n n CGA O2A HEM sing 204 n n C1B C2B HEM sing 205 n n C1B NB HEM sing 206 n n C2B C3B HEM doub 207 n n C2B CMB HEM sing 208 n n C3B C4B HEM sing 209 n n C3B CAB HEM sing 210 n n C4B NB HEM doub 211 n n CMB HMB HEM sing 212 n n CMB HMBA HEM sing 213 n n CMB HMBB HEM sing 214 n n CAB CBB HEM doub 215 n n CAB HAB HEM sing 216 n n CBB HBB HEM sing 217 n n CBB HBBA HEM sing 218 n n C1C C2C HEM sing 219 n y C1C NC HEM sing 220 n y C2C C3C HEM doub 221 n y C2C CMC HEM sing 222 n n C3C C4C HEM sing 223 n y C3C CAC HEM sing 224 n n C4C NC HEM sing 225 n y CMC HMC HEM sing 226 n n CMC HMCA HEM sing 227 n n CMC HMCB HEM sing 228 n n CAC CBC HEM doub 229 n n CAC HAC HEM sing 230 n n CBC HBC HEM sing 231 n n CBC HBCA HEM sing 232 n n C1D C2D HEM sing 233 n n C1D ND HEM doub 234 n n C2D C3D HEM doub 235 n n C2D CMD HEM sing 236 n n C3D C4D HEM sing 237 n n C3D CAD HEM sing 238 n n C4D ND HEM sing 239 n n CMD HMD HEM sing 240 n n CMD HMDA HEM sing 241 n n CMD HMDB HEM sing 242 n n CAD CBD HEM sing 243 n n CAD HAD HEM sing 244 n n CAD HADA HEM sing 245 n n CBD CGD HEM sing 246 n n CBD HBD HEM sing 247 n n CBD HBDA HEM sing 248 n n CGD O1D HEM doub 249 n n CGD O2D HEM sing 250 n n O2A H2A HEM sing 251 n n O2D H2D HEM sing 252 n n FE NA HEM sing 253 n n FE NB HEM sing 254 n n FE NC HEM sing 255 n n FE ND HEM sing 256 n n # _atom_sites.entry_id 4CX7 _atom_sites.fract_transf_matrix[1][1] 0.005285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 550 550 HEM HEM . F 3 H4B A 1 600 600 H4B H4B . G 4 S71 A 1 800 800 S71 S71 . H 5 GOL A 1 880 880 GOL GOL . I 6 SO4 A 1 910 910 SO4 SO4 . J 6 SO4 A 1 920 920 SO4 SO4 . K 6 SO4 A 1 930 930 SO4 SO4 . L 2 HEM B 1 550 550 HEM HEM . M 3 H4B B 1 600 600 H4B H4B . N 4 S71 B 1 800 800 S71 S71 . O 5 GOL B 1 880 880 GOL GOL . P 6 SO4 B 1 910 910 SO4 SO4 . Q 6 SO4 B 1 920 920 SO4 SO4 . R 2 HEM C 1 550 550 HEM HEM . S 3 H4B C 1 600 600 H4B H4B . T 4 S71 C 1 800 800 S71 S71 . U 5 GOL C 1 880 880 GOL GOL . V 6 SO4 C 1 910 910 SO4 SO4 . W 6 SO4 C 1 920 920 SO4 SO4 . X 2 HEM D 1 550 550 HEM HEM . Y 3 H4B D 1 600 600 H4B H4B . Z 4 S71 D 1 800 800 S71 S71 . AA 5 GOL D 1 880 880 GOL GOL . BA 6 SO4 D 1 910 910 SO4 SO4 . CA 6 SO4 D 1 920 920 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -10.605 -61.113 20.141 1 53.11 ? CHA HEM 550 A 1 HETATM 2 C CHB HEM . . . E 2 -5.96 -62.638 20.224 1 47.91 ? CHB HEM 550 A 1 HETATM 3 C CHC HEM . . . E 2 -5.024 -59.407 16.733 1 53.54 ? CHC HEM 550 A 1 HETATM 4 C CHD HEM . . . E 2 -9.144 -57.157 17.783 1 48.89 ? CHD HEM 550 A 1 HETATM 5 C C1A HEM . . . E 2 -9.473 -61.865 20.36 1 56.24 ? C1A HEM 550 A 1 HETATM 6 C C2A HEM . . . E 2 -9.437 -63.131 21.012 1 52.98 ? C2A HEM 550 A 1 HETATM 7 C C3A HEM . . . E 2 -8.133 -63.569 21.019 1 54.07 ? C3A HEM 550 A 1 HETATM 8 C C4A HEM . . . E 2 -7.346 -62.576 20.378 1 54.54 ? C4A HEM 550 A 1 HETATM 9 C CMA HEM . . . E 2 -7.557 -64.844 21.573 1 49.05 ? CMA HEM 550 A 1 HETATM 10 C CAA HEM . . . E 2 -10.639 -63.824 21.552 1 48.32 ? CAA HEM 550 A 1 HETATM 11 C CBA HEM . . . E 2 -11.207 -64.711 20.446 1 52.36 ? CBA HEM 550 A 1 HETATM 12 C CGA HEM . . . E 2 -12.559 -65.301 20.814 1 58.95 ? CGA HEM 550 A 1 HETATM 13 O O1A HEM . . . E 2 -12.894 -65.631 21.988 1 53.92 ? O1A HEM 550 A 1 HETATM 14 O O2A HEM . . . E 2 -13.395 -65.481 19.907 1 67.58 ? O2A HEM 550 A 1 HETATM 15 C C1B HEM . . . E 2 -5.316 -61.899 19.226 1 50.45 ? C1B HEM 550 A 1 HETATM 16 C C2B HEM . . . E 2 -3.993 -62.181 18.749 1 52.44 ? C2B HEM 550 A 1 HETATM 17 C C3B HEM . . . E 2 -3.689 -61.287 17.749 1 55.09 ? C3B HEM 550 A 1 HETATM 18 C C4B HEM . . . E 2 -4.917 -60.444 17.643 1 52.77 ? C4B HEM 550 A 1 HETATM 19 C CMB HEM . . . E 2 -3.076 -63.274 19.234 1 49.89 ? CMB HEM 550 A 1 HETATM 20 C CAB HEM . . . E 2 -2.44 -61.193 16.915 1 56.35 ? CAB HEM 550 A 1 HETATM 21 C CBB HEM . . . E 2 -1.224 -60.87 17.37 1 59.08 ? CBB HEM 550 A 1 HETATM 22 C C1C HEM . . . E 2 -6.072 -58.513 16.717 1 55.55 ? C1C HEM 550 A 1 HETATM 23 C C2C HEM . . . E 2 -6.162 -57.47 15.8 1 59.64 ? C2C HEM 550 A 1 HETATM 24 C C3C HEM . . . E 2 -7.337 -56.802 16.083 1 61.45 ? C3C HEM 550 A 1 HETATM 25 C C4C HEM . . . E 2 -7.963 -57.473 17.187 1 53.9 ? C4C HEM 550 A 1 HETATM 26 C CMC HEM . . . E 2 -5.164 -57.148 14.725 1 58.56 ? CMC HEM 550 A 1 HETATM 27 C CAC HEM . . . E 2 -7.817 -55.621 15.345 1 64.3 ? CAC HEM 550 A 1 HETATM 28 C CBC HEM . . . E 2 -6.996 -54.592 15.185 1 64.54 ? CBC HEM 550 A 1 HETATM 29 C C1D HEM . . . E 2 -9.877 -58.12 18.45 1 48.32 ? C1D HEM 550 A 1 HETATM 30 C C2D HEM . . . E 2 -11.319 -57.927 18.716 1 51.44 ? C2D HEM 550 A 1 HETATM 31 C C3D HEM . . . E 2 -11.734 -59.027 19.374 1 52.54 ? C3D HEM 550 A 1 HETATM 32 C C4D HEM . . . E 2 -10.524 -59.88 19.503 1 51.68 ? C4D HEM 550 A 1 HETATM 33 C CMD HEM . . . E 2 -12.177 -56.741 18.326 1 48.12 ? CMD HEM 550 A 1 HETATM 34 C CAD HEM . . . E 2 -13.155 -59.336 19.808 1 52.05 ? CAD HEM 550 A 1 HETATM 35 C CBD HEM . . . E 2 -13.687 -60.112 18.576 1 60.88 ? CBD HEM 550 A 1 HETATM 36 C CGD HEM . . . E 2 -14.994 -60.901 18.622 1 73.96 ? CGD HEM 550 A 1 HETATM 37 O O1D HEM . . . E 2 -15.261 -61.727 17.709 1 79.56 ? O1D HEM 550 A 1 HETATM 38 O O2D HEM . . . E 2 -15.856 -60.751 19.517 1 72.59 ? O2D HEM 550 A 1 HETATM 39 N NA HEM . . . E 2 -8.179 -61.511 20.011 1 56.73 ? NA HEM 550 A 1 HETATM 40 N NB HEM . . . E 2 -5.79 -60.831 18.582 1 50.3 ? NB HEM 550 A 1 HETATM 41 N NC HEM . . . E 2 -7.142 -58.47 17.564 1 50.47 ? NC HEM 550 A 1 HETATM 42 N ND HEM . . . E 2 -9.425 -59.258 18.996 1 49.4 ? ND HEM 550 A 1 HETATM 43 FE FE HEM . . . E 2 -7.692 -60 18.81 1 53.31 ? FE HEM 550 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #