data_4CX7
#
_model_server_result.job_id            XQ9Vn-710a0c1GoklAwKQw 
_model_server_result.datetime_utc      '2024-11-22 10:40:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cx7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":550}' 
#
_entry.id    4CX7 
#
_exptl.entry_id    4CX7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CX7 
_cell.length_a            189.223 
_cell.length_b            189.223 
_cell.length_c            232.773 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CX7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 L N N 
? 2 R N N 
? 2 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 127 A CYS 200 1_555 E FE HEM . A HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 B SG CYS 127 B CYS 200 1_555 L FE HEM . B HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 C SG CYS 127 C CYS 200 1_555 R FE HEM . C HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 D SG CYS 127 D CYS 200 1_555 X FE HEM . D HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 175 n n 
CHA C4D HEM doub 176 n n 
CHA HHA HEM sing 177 n n 
CHB C4A HEM sing 178 n n 
CHB C1B HEM doub 179 n n 
CHB HHB HEM sing 180 n n 
CHC C4B HEM sing 181 n n 
CHC C1C HEM doub 182 n n 
CHC HHC HEM sing 183 n n 
CHD C4C HEM doub 184 n n 
CHD C1D HEM sing 185 n n 
CHD HHD HEM sing 186 n n 
C1A C2A HEM doub 187 n y 
C1A NA HEM sing 188 n y 
C2A C3A HEM sing 189 n y 
C2A CAA HEM sing 190 n n 
C3A C4A HEM doub 191 n y 
C3A CMA HEM sing 192 n n 
C4A NA HEM sing 193 n y 
CMA HMA HEM sing 194 n n 
CMA HMAA HEM sing 195 n n 
CMA HMAB HEM sing 196 n n 
CAA CBA HEM sing 197 n n 
CAA HAA HEM sing 198 n n 
CAA HAAA HEM sing 199 n n 
CBA CGA HEM sing 200 n n 
CBA HBA HEM sing 201 n n 
CBA HBAA HEM sing 202 n n 
CGA O1A HEM doub 203 n n 
CGA O2A HEM sing 204 n n 
C1B C2B HEM sing 205 n n 
C1B NB HEM sing 206 n n 
C2B C3B HEM doub 207 n n 
C2B CMB HEM sing 208 n n 
C3B C4B HEM sing 209 n n 
C3B CAB HEM sing 210 n n 
C4B NB HEM doub 211 n n 
CMB HMB HEM sing 212 n n 
CMB HMBA HEM sing 213 n n 
CMB HMBB HEM sing 214 n n 
CAB CBB HEM doub 215 n n 
CAB HAB HEM sing 216 n n 
CBB HBB HEM sing 217 n n 
CBB HBBA HEM sing 218 n n 
C1C C2C HEM sing 219 n y 
C1C NC HEM sing 220 n y 
C2C C3C HEM doub 221 n y 
C2C CMC HEM sing 222 n n 
C3C C4C HEM sing 223 n y 
C3C CAC HEM sing 224 n n 
C4C NC HEM sing 225 n y 
CMC HMC HEM sing 226 n n 
CMC HMCA HEM sing 227 n n 
CMC HMCB HEM sing 228 n n 
CAC CBC HEM doub 229 n n 
CAC HAC HEM sing 230 n n 
CBC HBC HEM sing 231 n n 
CBC HBCA HEM sing 232 n n 
C1D C2D HEM sing 233 n n 
C1D ND HEM doub 234 n n 
C2D C3D HEM doub 235 n n 
C2D CMD HEM sing 236 n n 
C3D C4D HEM sing 237 n n 
C3D CAD HEM sing 238 n n 
C4D ND HEM sing 239 n n 
CMD HMD HEM sing 240 n n 
CMD HMDA HEM sing 241 n n 
CMD HMDB HEM sing 242 n n 
CAD CBD HEM sing 243 n n 
CAD HAD HEM sing 244 n n 
CAD HADA HEM sing 245 n n 
CBD CGD HEM sing 246 n n 
CBD HBD HEM sing 247 n n 
CBD HBDA HEM sing 248 n n 
CGD O1D HEM doub 249 n n 
CGD O2D HEM sing 250 n n 
O2A H2A HEM sing 251 n n 
O2D H2D HEM sing 252 n n 
FE NA HEM sing 253 n n 
FE NB HEM sing 254 n n 
FE NC HEM sing 255 n n 
FE ND HEM sing 256 n n 
#
_atom_sites.entry_id                     4CX7 
_atom_sites.fract_transf_matrix[1][1]    0.005285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 550 550 HEM HEM . 
F 3 H4B A 1 600 600 H4B H4B . 
G 4 S71 A 1 800 800 S71 S71 . 
H 5 GOL A 1 880 880 GOL GOL . 
I 6 SO4 A 1 910 910 SO4 SO4 . 
J 6 SO4 A 1 920 920 SO4 SO4 . 
K 6 SO4 A 1 930 930 SO4 SO4 . 
L 2 HEM B 1 550 550 HEM HEM . 
M 3 H4B B 1 600 600 H4B H4B . 
N 4 S71 B 1 800 800 S71 S71 . 
O 5 GOL B 1 880 880 GOL GOL . 
P 6 SO4 B 1 910 910 SO4 SO4 . 
Q 6 SO4 B 1 920 920 SO4 SO4 . 
R 2 HEM C 1 550 550 HEM HEM . 
S 3 H4B C 1 600 600 H4B H4B . 
T 4 S71 C 1 800 800 S71 S71 . 
U 5 GOL C 1 880 880 GOL GOL . 
V 6 SO4 C 1 910 910 SO4 SO4 . 
W 6 SO4 C 1 920 920 SO4 SO4 . 
X 2 HEM D 1 550 550 HEM HEM . 
Y 3 H4B D 1 600 600 H4B H4B . 
Z 4 S71 D 1 800 800 S71 S71 . 
AA 5 GOL D 1 880 880 GOL GOL . 
BA 6 SO4 D 1 910 910 SO4 SO4 . 
CA 6 SO4 D 1 920 920 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . X 2 23.146 -121.63 54.712 1 59.61 ? CHA HEM 550 D 1 
HETATM 2 C CHB HEM . . . X 2 24.043 -116.826 54.688 1 54.58 ? CHB HEM 550 D 1 
HETATM 3 C CHC HEM . . . X 2 27.315 -117.601 58.113 1 58.83 ? CHC HEM 550 D 1 
HETATM 4 C CHD HEM . . . X 2 27.051 -122.37 57.454 1 51.43 ? CHD HEM 550 D 1 
HETATM 5 C C1A HEM . . . X 2 23.028 -120.281 54.54 1 62.28 ? C1A HEM 550 D 1 
HETATM 6 C C2A HEM . . . X 2 21.886 -119.651 54.002 1 63.18 ? C2A HEM 550 D 1 
HETATM 7 C C3A HEM . . . X 2 22.127 -118.32 53.992 1 62.75 ? C3A HEM 550 D 1 
HETATM 8 C C4A HEM . . . X 2 23.432 -118.094 54.517 1 61.79 ? C4A HEM 550 D 1 
HETATM 9 C CMA HEM . . . X 2 21.168 -117.266 53.506 1 62.3 ? CMA HEM 550 D 1 
HETATM 10 C CAA HEM . . . X 2 20.633 -120.34 53.538 1 61.63 ? CAA HEM 550 D 1 
HETATM 11 C CBA HEM . . . X 2 19.643 -120.301 54.686 1 69.3 ? CBA HEM 550 D 1 
HETATM 12 C CGA HEM . . . X 2 18.419 -121.115 54.383 1 78.35 ? CGA HEM 550 D 1 
HETATM 13 O O1A HEM . . . X 2 17.49 -121.238 55.217 1 85.04 ? O1A HEM 550 D 1 
HETATM 14 O O2A HEM . . . X 2 18.321 -121.675 53.284 1 80.53 ? O2A HEM 550 D 1 
HETATM 15 C C1B HEM . . . X 2 24.994 -116.586 55.694 1 53.28 ? C1B HEM 550 D 1 
HETATM 16 C C2B HEM . . . X 2 25.465 -115.308 56.169 1 55.69 ? C2B HEM 550 D 1 
HETATM 17 C C3B HEM . . . X 2 26.393 -115.512 57.13 1 59.19 ? C3B HEM 550 D 1 
HETATM 18 C C4B HEM . . . X 2 26.47 -116.989 57.218 1 56.43 ? C4B HEM 550 D 1 
HETATM 19 C CMB HEM . . . X 2 25.103 -113.913 55.76 1 61.69 ? CMB HEM 550 D 1 
HETATM 20 C CAB HEM . . . X 2 27.123 -114.5 57.967 1 60.89 ? CAB HEM 550 D 1 
HETATM 21 C CBB HEM . . . X 2 28.108 -113.689 57.6 1 63.06 ? CBB HEM 550 D 1 
HETATM 22 C C1C HEM . . . X 2 27.486 -118.955 58.274 1 56.42 ? C1C HEM 550 D 1 
HETATM 23 C C2C HEM . . . X 2 28.251 -119.512 59.306 1 58.18 ? C2C HEM 550 D 1 
HETATM 24 C C3C HEM . . . X 2 28.189 -120.879 59.14 1 57.23 ? C3C HEM 550 D 1 
HETATM 25 C C4C HEM . . . X 2 27.365 -121.14 57.992 1 56.76 ? C4C HEM 550 D 1 
HETATM 26 C CMC HEM . . . X 2 29.015 -118.759 60.376 1 54.78 ? CMC HEM 550 D 1 
HETATM 27 C CAC HEM . . . X 2 28.883 -121.848 60.008 1 55.21 ? CAC HEM 550 D 1 
HETATM 28 C CBC HEM . . . X 2 30.18 -121.672 60.255 1 51.05 ? CBC HEM 550 D 1 
HETATM 29 C C1D HEM . . . X 2 25.919 -122.484 56.658 1 51.95 ? C1D HEM 550 D 1 
HETATM 30 C C2D HEM . . . X 2 25.387 -123.815 56.395 1 53.03 ? C2D HEM 550 D 1 
HETATM 31 C C3D HEM . . . X 2 24.292 -123.648 55.647 1 56.61 ? C3D HEM 550 D 1 
HETATM 32 C C4D HEM . . . X 2 24.181 -122.175 55.439 1 54.17 ? C4D HEM 550 D 1 
HETATM 33 C CMD HEM . . . X 2 25.95 -125.122 56.868 1 51.68 ? CMD HEM 550 D 1 
HETATM 34 C CAD HEM . . . X 2 23.384 -124.779 55.182 1 55.86 ? CAD HEM 550 D 1 
HETATM 35 C CBD HEM . . . X 2 21.923 -124.373 55.532 1 61.72 ? CBD HEM 550 D 1 
HETATM 36 C CGD HEM . . . X 2 20.951 -125.404 56.122 1 70.02 ? CGD HEM 550 D 1 
HETATM 37 O O1D HEM . . . X 2 20.53 -125.218 57.268 1 82.2 ? O1D HEM 550 D 1 
HETATM 38 O O2D HEM . . . X 2 20.468 -126.42 55.545 1 67.03 ? O2D HEM 550 D 1 
HETATM 39 N NA HEM . . . X 2 23.963 -119.34 54.849 1 59.42 ? NA HEM 550 D 1 
HETATM 40 N NB HEM . . . X 2 25.675 -117.552 56.313 1 54.5 ? NB HEM 550 D 1 
HETATM 41 N NC HEM . . . X 2 26.975 -119.929 57.488 1 53.27 ? NC HEM 550 D 1 
HETATM 42 N ND HEM . . . X 2 25.206 -121.526 56.006 1 51.92 ? ND HEM 550 D 1 
HETATM 43 FE FE HEM . . . X 2 25.433 -119.651 56.137 1 56.01 ? FE HEM 550 D 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#