data_4CX7
#
_model_server_result.job_id            8d0-xnXJF-G5W92G02e3Aw 
_model_server_result.datetime_utc      '2024-11-05 12:23:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cx7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":800}' 
#
_entry.id    4CX7 
#
_exptl.entry_id    4CX7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.498 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R)-6-(3-amino-2-(5-(2-(6-amino-4-methylpyridin-2-yl)ethyl)pyridin-3-yl)propyl)-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CX7 
_cell.length_a            189.223 
_cell.length_b            189.223 
_cell.length_c            232.773 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CX7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 N N N 
? 4 T N N 
? 4 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 127 A CYS 200 1_555 E FE HEM . A HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 B SG CYS 127 B CYS 200 1_555 L FE HEM . B HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 C SG CYS 127 C CYS 200 1_555 R FE HEM . C HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 D SG CYS 127 D CYS 200 1_555 X FE HEM . D HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
#
_chem_comp.formula           'C22 H28 N6' 
_chem_comp.formula_weight    376.498 
_chem_comp.id                S71 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R)-6-(3-amino-2-(5-(2-(6-amino-4-methylpyridin-2-yl)ethyl)pyridin-3-yl)propyl)-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N22 C22 S71 sing 403 n n 
C22 C23 S71 sing 404 n y 
C22 N21 S71 doub 405 n y 
C23 C24 S71 doub 406 n y 
C24 C27 S71 sing 407 n n 
C24 C25 S71 sing 408 n y 
C25 C26 S71 doub 409 n y 
N21 C26 S71 sing 410 n y 
C26 C20 S71 sing 411 n n 
C20 C17 S71 sing 412 n n 
C17 C18 S71 sing 413 n n 
C17 C15 S71 sing 414 n n 
C18 N19 S71 sing 415 n n 
C15 C16 S71 sing 416 n y 
C15 C14 S71 doub 417 n y 
C16 N11 S71 doub 418 n y 
N11 C12 S71 sing 419 n y 
C12 C13 S71 doub 420 n y 
C14 C13 S71 sing 421 n y 
C13 C09 S71 sing 422 n n 
C09 C08 S71 sing 423 n n 
C08 C06 S71 sing 424 n n 
C06 C05 S71 sing 425 n y 
C06 N01 S71 doub 426 n y 
C05 C04 S71 doub 427 n y 
C04 C07 S71 sing 428 n n 
C04 C03 S71 sing 429 n y 
N01 C02 S71 sing 430 n y 
C02 N02 S71 sing 431 n n 
C02 C03 S71 doub 432 n y 
N22 H221 S71 sing 433 n n 
N22 H222 S71 sing 434 n n 
C23 H23 S71 sing 435 n n 
C27 H271 S71 sing 436 n n 
C27 H272 S71 sing 437 n n 
C27 H273 S71 sing 438 n n 
C25 H25 S71 sing 439 n n 
C20 H201 S71 sing 440 n n 
C20 H202 S71 sing 441 n n 
C17 H17 S71 sing 442 n n 
C18 H181 S71 sing 443 n n 
C18 H182 S71 sing 444 n n 
N19 H191 S71 sing 445 n n 
N19 H192 S71 sing 446 n n 
C16 H16 S71 sing 447 n n 
C14 H14 S71 sing 448 n n 
C12 H12 S71 sing 449 n n 
C09 H091 S71 sing 450 n n 
C09 H092 S71 sing 451 n n 
C08 H081 S71 sing 452 n n 
C08 H082 S71 sing 453 n n 
C05 H05 S71 sing 454 n n 
C07 H071 S71 sing 455 n n 
C07 H072 S71 sing 456 n n 
C07 H073 S71 sing 457 n n 
C03 H03 S71 sing 458 n n 
N02 H021 S71 sing 459 n n 
N02 H022 S71 sing 460 n n 
#
_atom_sites.entry_id                     4CX7 
_atom_sites.fract_transf_matrix[1][1]    0.005285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 550 550 HEM HEM . 
F 3 H4B A 1 600 600 H4B H4B . 
G 4 S71 A 1 800 800 S71 S71 . 
H 5 GOL A 1 880 880 GOL GOL . 
I 6 SO4 A 1 910 910 SO4 SO4 . 
J 6 SO4 A 1 920 920 SO4 SO4 . 
K 6 SO4 A 1 930 930 SO4 SO4 . 
L 2 HEM B 1 550 550 HEM HEM . 
M 3 H4B B 1 600 600 H4B H4B . 
N 4 S71 B 1 800 800 S71 S71 . 
O 5 GOL B 1 880 880 GOL GOL . 
P 6 SO4 B 1 910 910 SO4 SO4 . 
Q 6 SO4 B 1 920 920 SO4 SO4 . 
R 2 HEM C 1 550 550 HEM HEM . 
S 3 H4B C 1 600 600 H4B H4B . 
T 4 S71 C 1 800 800 S71 S71 . 
U 5 GOL C 1 880 880 GOL GOL . 
V 6 SO4 C 1 910 910 SO4 SO4 . 
W 6 SO4 C 1 920 920 SO4 SO4 . 
X 2 HEM D 1 550 550 HEM HEM . 
Y 3 H4B D 1 600 600 H4B H4B . 
Z 4 S71 D 1 800 800 S71 S71 . 
AA 5 GOL D 1 880 880 GOL GOL . 
BA 6 SO4 D 1 910 910 SO4 SO4 . 
CA 6 SO4 D 1 920 920 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N22 S71 . . . Z 4 18.318 -129.56 54.675 1 68.55 ? N22 S71 800 D 1 
HETATM 2 C C22 S71 . . . Z 4 17.297 -128.937 55.342 1 78.19 ? C22 S71 800 D 1 
HETATM 3 C C23 S71 . . . Z 4 16.033 -129.552 55.356 1 73.78 ? C23 S71 800 D 1 
HETATM 4 C C24 S71 . . . Z 4 15.008 -128.905 56.046 1 77.11 ? C24 S71 800 D 1 
HETATM 5 C C27 S71 . . . Z 4 13.639 -129.525 56.1 1 79.32 ? C27 S71 800 D 1 
HETATM 6 C C25 S71 . . . Z 4 15.249 -127.68 56.687 1 75.73 ? C25 S71 800 D 1 
HETATM 7 N N21 S71 . . . Z 4 17.51 -127.725 55.977 1 75.98 ? N21 S71 800 D 1 
HETATM 8 C C26 S71 . . . Z 4 16.51 -127.085 56.629 1 70.07 ? C26 S71 800 D 1 
HETATM 9 C C20 S71 . . . Z 4 16.764 -125.778 57.33 1 68.56 ? C20 S71 800 D 1 
HETATM 10 C C17 S71 . . . Z 4 16.455 -124.488 56.572 1 76.22 ? C17 S71 800 D 1 
HETATM 11 C C18 S71 . . . Z 4 15.152 -124.406 55.787 1 80.13 ? C18 S71 800 D 1 
HETATM 12 N N19 S71 . . . Z 4 15.345 -123.286 54.88 1 75.27 ? N19 S71 800 D 1 
HETATM 13 C C15 S71 . . . Z 4 16.423 -123.396 57.576 1 74.68 ? C15 S71 800 D 1 
HETATM 14 C C16 S71 . . . Z 4 15.252 -122.912 58.198 1 73.16 ? C16 S71 800 D 1 
HETATM 15 N N11 S71 . . . Z 4 15.338 -121.908 59.098 1 69.82 ? N11 S71 800 D 1 
HETATM 16 C C12 S71 . . . Z 4 16.544 -121.363 59.418 1 65.29 ? C12 S71 800 D 1 
HETATM 17 C C14 S71 . . . Z 4 17.652 -122.847 57.884 1 65.26 ? C14 S71 800 D 1 
HETATM 18 C C13 S71 . . . Z 4 17.729 -121.83 58.805 1 60.89 ? C13 S71 800 D 1 
HETATM 19 C C09 S71 . . . Z 4 19.12 -121.293 59.076 1 53.22 ? C09 S71 800 D 1 
HETATM 20 C C08 S71 . . . Z 4 19.263 -120.054 58.219 1 55.31 ? C08 S71 800 D 1 
HETATM 21 C C06 S71 . . . Z 4 20.584 -119.326 58.269 1 51.58 ? C06 S71 800 D 1 
HETATM 22 C C05 S71 . . . Z 4 21.7 -119.883 58.88 1 48.43 ? C05 S71 800 D 1 
HETATM 23 C C04 S71 . . . Z 4 22.873 -119.144 58.866 1 50.66 ? C04 S71 800 D 1 
HETATM 24 C C07 S71 . . . Z 4 24.151 -119.647 59.488 1 47.87 ? C07 S71 800 D 1 
HETATM 25 N N01 S71 . . . Z 4 20.63 -118.105 57.663 1 51.35 ? N01 S71 800 D 1 
HETATM 26 C C02 S71 . . . Z 4 21.766 -117.372 57.625 1 55.42 ? C02 S71 800 D 1 
HETATM 27 N N02 S71 . . . Z 4 21.837 -116.148 57.024 1 54.52 ? N02 S71 800 D 1 
HETATM 28 C C03 S71 . . . Z 4 22.896 -117.897 58.239 1 56.46 ? C03 S71 800 D 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#