data_4CXY
#
_model_server_result.job_id            Dz4yS2fHs3de6ZsOZoh_pw 
_model_server_result.datetime_utc      '2025-09-06 20:11:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1503}' 
#
_entry.id    4CXY 
#
_exptl.entry_id    4CXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              235.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(E)-4-(2-Nicotinoylhydrazinyl)-4-oxobut-2-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CXY 
_cell.length_a            141.92 
_cell.length_b            141.92 
_cell.length_c            83.771 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 221 A HIS 231 1_555 C NI NI . A NI 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc2 A OD1 ASP 223 A ASP 233 1_555 C NI NI . A NI 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc3 A NE2 HIS 297 A HIS 307 1_555 C NI NI . A NI 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc4 B OAB DGR . A DGR 1503 1_555 C NI NI . A NI 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc5 B NAM DGR . A DGR 1503 1_555 C NI NI . A NI 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc6 C NI NI . A NI 1504 1_555 E O HOH . A HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
#
_chem_comp.formula           'C10 H9 N3 O4' 
_chem_comp.formula_weight    235.196 
_chem_comp.id                DGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(E)-4-(2-Nicotinoylhydrazinyl)-4-oxobut-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAN DGR sing 83 n n 
CAN OAD DGR doub 84 n n 
CAN CAE DGR sing 85 n n 
CAE CAF DGR doub 86 e n 
CAF CAO DGR sing 87 n n 
CAO OAB DGR doub 88 n n 
CAO NAL DGR sing 89 n n 
NAL NAM DGR sing 90 n n 
NAM CAP DGR sing 91 n n 
CAP OAC DGR doub 92 n n 
CAP CAQ DGR sing 93 n n 
CAQ CAI DGR sing 94 n y 
CAQ CAJ DGR doub 95 n y 
CAI CAG DGR doub 96 n y 
CAG CAH DGR sing 97 n y 
CAH NAK DGR doub 98 n y 
NAK CAJ DGR sing 99 n y 
OAA HAA DGR sing 100 n n 
CAE HAE DGR sing 101 n n 
CAF HAF DGR sing 102 n n 
NAL HAL DGR sing 103 n n 
NAM HAM DGR sing 104 n n 
CAI HAI DGR sing 105 n n 
CAJ HAJ DGR sing 106 n n 
CAG HAG DGR sing 107 n n 
CAH HAH DGR sing 108 n n 
#
_atom_sites.entry_id                     4CXY 
_atom_sites.fract_transf_matrix[1][1]    0.007046 
_atom_sites.fract_transf_matrix[1][2]    0.004068 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DGR A 1 1503 1503 DGR DGR . 
C 3 NI A 1 1504 1504 NI NI . 
D 3 NI A 1 1505 1505 NI NI . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
E 4 HOH A 7 2007 2007 HOH HOH . 
E 4 HOH A 8 2008 2008 HOH HOH . 
E 4 HOH A 9 2009 2009 HOH HOH . 
E 4 HOH A 10 2010 2010 HOH HOH . 
E 4 HOH A 11 2011 2011 HOH HOH . 
E 4 HOH A 12 2012 2012 HOH HOH . 
E 4 HOH A 13 2013 2013 HOH HOH . 
E 4 HOH A 14 2014 2014 HOH HOH . 
E 4 HOH A 15 2015 2015 HOH HOH . 
E 4 HOH A 16 2016 2016 HOH HOH . 
E 4 HOH A 17 2017 2017 HOH HOH . 
E 4 HOH A 18 2018 2018 HOH HOH . 
E 4 HOH A 19 2019 2019 HOH HOH . 
E 4 HOH A 20 2020 2020 HOH HOH . 
E 4 HOH A 21 2021 2021 HOH HOH . 
E 4 HOH A 22 2022 2022 HOH HOH . 
E 4 HOH A 23 2023 2023 HOH HOH . 
E 4 HOH A 24 2024 2024 HOH HOH . 
E 4 HOH A 25 2025 2025 HOH HOH . 
E 4 HOH A 26 2026 2026 HOH HOH . 
E 4 HOH A 27 2027 2027 HOH HOH . 
E 4 HOH A 28 2028 2028 HOH HOH . 
E 4 HOH A 29 2029 2029 HOH HOH . 
E 4 HOH A 30 2030 2030 HOH HOH . 
E 4 HOH A 31 2031 2031 HOH HOH . 
E 4 HOH A 32 2032 2032 HOH HOH . 
E 4 HOH A 33 2033 2033 HOH HOH . 
E 4 HOH A 34 2034 2034 HOH HOH . 
E 4 HOH A 35 2035 2035 HOH HOH . 
E 4 HOH A 36 2036 2036 HOH HOH . 
E 4 HOH A 37 2037 2037 HOH HOH . 
E 4 HOH A 38 2038 2038 HOH HOH . 
E 4 HOH A 39 2039 2039 HOH HOH . 
E 4 HOH A 40 2040 2040 HOH HOH . 
E 4 HOH A 41 2041 2041 HOH HOH . 
E 4 HOH A 42 2042 2042 HOH HOH . 
E 4 HOH A 43 2043 2043 HOH HOH . 
E 4 HOH A 44 2044 2044 HOH HOH . 
E 4 HOH A 45 2045 2045 HOH HOH . 
E 4 HOH A 46 2046 2046 HOH HOH . 
E 4 HOH A 47 2047 2047 HOH HOH . 
E 4 HOH A 48 2048 2048 HOH HOH . 
E 4 HOH A 49 2049 2049 HOH HOH . 
E 4 HOH A 50 2050 2050 HOH HOH . 
E 4 HOH A 51 2051 2051 HOH HOH . 
E 4 HOH A 52 2052 2052 HOH HOH . 
E 4 HOH A 53 2053 2053 HOH HOH . 
E 4 HOH A 54 2054 2054 HOH HOH . 
E 4 HOH A 55 2055 2055 HOH HOH . 
E 4 HOH A 56 2056 2056 HOH HOH . 
E 4 HOH A 57 2057 2057 HOH HOH . 
E 4 HOH A 58 2058 2058 HOH HOH . 
E 4 HOH A 59 2059 2059 HOH HOH . 
E 4 HOH A 60 2060 2060 HOH HOH . 
E 4 HOH A 61 2061 2061 HOH HOH . 
E 4 HOH A 62 2062 2062 HOH HOH . 
E 4 HOH A 63 2063 2063 HOH HOH . 
E 4 HOH A 64 2064 2064 HOH HOH . 
E 4 HOH A 65 2065 2065 HOH HOH . 
E 4 HOH A 66 2066 2066 HOH HOH . 
E 4 HOH A 67 2067 2067 HOH HOH . 
E 4 HOH A 68 2068 2068 HOH HOH . 
E 4 HOH A 69 2069 2069 HOH HOH . 
E 4 HOH A 70 2070 2070 HOH HOH . 
E 4 HOH A 71 2071 2071 HOH HOH . 
E 4 HOH A 72 2072 2072 HOH HOH . 
E 4 HOH A 73 2073 2073 HOH HOH . 
E 4 HOH A 74 2074 2074 HOH HOH . 
E 4 HOH A 75 2075 2075 HOH HOH . 
E 4 HOH A 76 2076 2076 HOH HOH . 
E 4 HOH A 77 2077 2077 HOH HOH . 
E 4 HOH A 78 2078 2078 HOH HOH . 
E 4 HOH A 79 2079 2079 HOH HOH . 
E 4 HOH A 80 2080 2080 HOH HOH . 
E 4 HOH A 81 2081 2081 HOH HOH . 
E 4 HOH A 82 2082 2082 HOH HOH . 
E 4 HOH A 83 2083 2083 HOH HOH . 
E 4 HOH A 84 2084 2084 HOH HOH . 
E 4 HOH A 85 2085 2085 HOH HOH . 
E 4 HOH A 86 2086 2086 HOH HOH . 
E 4 HOH A 87 2087 2087 HOH HOH . 
E 4 HOH A 88 2088 2088 HOH HOH . 
E 4 HOH A 89 2089 2089 HOH HOH . 
E 4 HOH A 90 2090 2090 HOH HOH . 
E 4 HOH A 91 2091 2091 HOH HOH . 
E 4 HOH A 92 2092 2092 HOH HOH . 
E 4 HOH A 93 2093 2093 HOH HOH . 
E 4 HOH A 94 2094 2094 HOH HOH . 
E 4 HOH A 95 2095 2095 HOH HOH . 
E 4 HOH A 96 2096 2096 HOH HOH . 
E 4 HOH A 97 2097 2097 HOH HOH . 
E 4 HOH A 98 2098 2098 HOH HOH . 
E 4 HOH A 99 2099 2099 HOH HOH . 
E 4 HOH A 100 2100 2100 HOH HOH . 
E 4 HOH A 101 2101 2101 HOH HOH . 
E 4 HOH A 102 2102 2102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA DGR . . . B 2 -24.608 -25.657 5.412 1 76.42 ? OAA DGR 1503 A 1 
HETATM 2 C CAN DGR . . . B 2 -23.495 -25.94 5.839 1 73.15 ? CAN DGR 1503 A 1 
HETATM 3 O OAD DGR . . . B 2 -23.184 -26.608 6.813 1 65.9 ? OAD DGR 1503 A 1 
HETATM 4 C CAE DGR . . . B 2 -22.286 -25.325 5.023 1 71.7 ? CAE DGR 1503 A 1 
HETATM 5 C CAF DGR . . . B 2 -22.56 -24.936 3.608 1 79.41 ? CAF DGR 1503 A 1 
HETATM 6 C CAO DGR . . . B 2 -21.321 -24.423 2.921 1 75.42 ? CAO DGR 1503 A 1 
HETATM 7 O OAB DGR . . . B 2 -20.3 -25.026 2.861 1 69.18 ? OAB DGR 1503 A 1 
HETATM 8 N NAL DGR . . . B 2 -21.371 -23.107 2.377 1 85.69 ? NAL DGR 1503 A 1 
HETATM 9 N NAM DGR . . . B 2 -20.346 -22.437 1.695 1 80.44 ? NAM DGR 1503 A 1 
HETATM 10 C CAP DGR . . . B 2 -20.7 -21.868 0.444 1 77.15 ? CAP DGR 1503 A 1 
HETATM 11 O OAC DGR . . . B 2 -21.788 -21.991 -0.03 1 93.3 ? OAC DGR 1503 A 1 
HETATM 12 C CAQ DGR . . . B 2 -19.688 -21.105 -0.404 1 77.52 ? CAQ DGR 1503 A 1 
HETATM 13 C CAI DGR . . . B 2 -19.431 -21.481 -1.705 1 73.83 ? CAI DGR 1503 A 1 
HETATM 14 C CAG DGR . . . B 2 -18.501 -20.768 -2.478 1 79.27 ? CAG DGR 1503 A 1 
HETATM 15 C CAH DGR . . . B 2 -17.851 -19.66 -1.917 1 79.12 ? CAH DGR 1503 A 1 
HETATM 16 N NAK DGR . . . B 2 -18.095 -19.244 -0.648 1 68.97 ? NAK DGR 1503 A 1 
HETATM 17 C CAJ DGR . . . B 2 -18.991 -19.959 0.081 1 81.79 ? CAJ DGR 1503 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#