data_4CYJ # _model_server_result.job_id e0kVNPQgsWRev6Sn1naDzQ _model_server_result.datetime_utc '2024-10-19 04:42:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1000}' # _entry.id 4CYJ # _exptl.entry_id 4CYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.86 _cell.angle_gamma 90 _cell.entry_id 4CYJ _cell.length_a 89.094 _cell.length_b 145.359 _cell.length_c 101.811 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,J,O,P 1 1 C,D,F,K,L,M,N,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 266 1_555 A SG CYS 191 A CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 64 B CYS 266 1_555 B SG CYS 191 B CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 64 C CYS 266 1_555 C SG CYS 191 C CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 64 D CYS 266 1_555 D SG CYS 191 D CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD2 ASP 55 A ASP 257 1_555 H MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc2 A O SER 69 A SER 271 1_555 H MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 G O1A ATP . A ATP 900 1_555 H MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 G O3A ATP . A ATP 900 1_555 H MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc5 G O3G ATP . A ATP 900 1_555 H MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc6 B OD1 ASP 55 B ASP 257 1_555 J MG MG . B MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc7 I O1A ATP . B ATP 900 1_555 J MG MG . B MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc8 C OD1 ASP 55 C ASP 257 1_555 L MG MG . C MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc9 K O3B ATP . C ATP 900 1_555 L MG MG . C MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc10 K O2B ATP . C ATP 900 1_555 L MG MG . C MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc11 D OD1 ASP 55 D ASP 257 1_555 N MG MG . D MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 M O3B ATP . D ATP 900 1_555 N MG MG . D MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc13 M O1A ATP . D ATP 900 1_555 N MG MG . D MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4CYJ _atom_sites.fract_transf_matrix[1][1] 0.011224 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000954 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ATP A 1 900 900 ATP ATP . H 4 MG A 1 1000 1000 MG MG . I 3 ATP B 1 900 900 ATP ATP . J 4 MG B 1 1000 1000 MG MG . K 3 ATP C 1 900 900 ATP ATP . L 4 MG C 1 1000 1000 MG MG . M 3 ATP D 1 900 900 ATP ATP . N 4 MG D 1 1000 1000 MG MG . O 5 HOH A 1 2001 2001 HOH HOH . O 5 HOH A 2 2002 2002 HOH HOH . O 5 HOH A 3 2003 2003 HOH HOH . O 5 HOH A 4 2004 2004 HOH HOH . O 5 HOH A 5 2005 2005 HOH HOH . O 5 HOH A 6 2006 2006 HOH HOH . O 5 HOH A 7 2007 2007 HOH HOH . O 5 HOH A 8 2008 2008 HOH HOH . O 5 HOH A 9 2009 2009 HOH HOH . O 5 HOH A 10 2010 2010 HOH HOH . O 5 HOH A 11 2011 2011 HOH HOH . O 5 HOH A 12 2012 2012 HOH HOH . O 5 HOH A 13 2013 2013 HOH HOH . O 5 HOH A 14 2014 2014 HOH HOH . O 5 HOH A 15 2015 2015 HOH HOH . O 5 HOH A 16 2016 2016 HOH HOH . O 5 HOH A 17 2017 2017 HOH HOH . O 5 HOH A 18 2018 2018 HOH HOH . O 5 HOH A 19 2019 2019 HOH HOH . O 5 HOH A 20 2020 2020 HOH HOH . O 5 HOH A 21 2021 2021 HOH HOH . O 5 HOH A 22 2022 2022 HOH HOH . O 5 HOH A 23 2023 2023 HOH HOH . O 5 HOH A 24 2024 2024 HOH HOH . O 5 HOH A 25 2025 2025 HOH HOH . O 5 HOH A 26 2026 2026 HOH HOH . O 5 HOH A 27 2027 2027 HOH HOH . O 5 HOH A 28 2028 2028 HOH HOH . O 5 HOH A 29 2029 2029 HOH HOH . O 5 HOH A 30 2030 2030 HOH HOH . O 5 HOH A 31 2031 2031 HOH HOH . O 5 HOH A 32 2032 2032 HOH HOH . O 5 HOH A 33 2033 2033 HOH HOH . O 5 HOH A 34 2034 2034 HOH HOH . O 5 HOH A 35 2035 2035 HOH HOH . O 5 HOH A 36 2036 2036 HOH HOH . O 5 HOH A 37 2037 2037 HOH HOH . O 5 HOH A 38 2038 2038 HOH HOH . O 5 HOH A 39 2039 2039 HOH HOH . O 5 HOH A 40 2040 2040 HOH HOH . O 5 HOH A 41 2041 2041 HOH HOH . P 5 HOH B 1 2001 2001 HOH HOH . P 5 HOH B 2 2002 2002 HOH HOH . P 5 HOH B 3 2003 2003 HOH HOH . P 5 HOH B 4 2004 2004 HOH HOH . P 5 HOH B 5 2005 2005 HOH HOH . P 5 HOH B 6 2006 2006 HOH HOH . P 5 HOH B 7 2007 2007 HOH HOH . P 5 HOH B 8 2008 2008 HOH HOH . P 5 HOH B 9 2009 2009 HOH HOH . P 5 HOH B 10 2010 2010 HOH HOH . P 5 HOH B 11 2011 2011 HOH HOH . P 5 HOH B 12 2012 2012 HOH HOH . P 5 HOH B 13 2013 2013 HOH HOH . P 5 HOH B 14 2014 2014 HOH HOH . P 5 HOH B 15 2015 2015 HOH HOH . P 5 HOH B 16 2016 2016 HOH HOH . P 5 HOH B 17 2017 2017 HOH HOH . P 5 HOH B 18 2018 2018 HOH HOH . P 5 HOH B 19 2019 2019 HOH HOH . P 5 HOH B 20 2020 2020 HOH HOH . P 5 HOH B 21 2021 2021 HOH HOH . P 5 HOH B 22 2022 2022 HOH HOH . P 5 HOH B 23 2023 2023 HOH HOH . P 5 HOH B 24 2024 2024 HOH HOH . P 5 HOH B 25 2025 2025 HOH HOH . P 5 HOH B 26 2026 2026 HOH HOH . P 5 HOH B 27 2027 2027 HOH HOH . P 5 HOH B 28 2028 2028 HOH HOH . P 5 HOH B 29 2029 2029 HOH HOH . P 5 HOH B 30 2030 2030 HOH HOH . P 5 HOH B 31 2031 2031 HOH HOH . P 5 HOH B 32 2032 2032 HOH HOH . P 5 HOH B 33 2033 2033 HOH HOH . P 5 HOH B 34 2034 2034 HOH HOH . P 5 HOH B 35 2035 2035 HOH HOH . Q 5 HOH C 1 2001 2001 HOH HOH . Q 5 HOH C 2 2002 2002 HOH HOH . Q 5 HOH C 3 2003 2003 HOH HOH . Q 5 HOH C 4 2004 2004 HOH HOH . Q 5 HOH C 5 2005 2005 HOH HOH . Q 5 HOH C 6 2006 2006 HOH HOH . Q 5 HOH C 7 2007 2007 HOH HOH . Q 5 HOH C 8 2008 2008 HOH HOH . Q 5 HOH C 9 2009 2009 HOH HOH . Q 5 HOH C 10 2010 2010 HOH HOH . Q 5 HOH C 11 2011 2011 HOH HOH . Q 5 HOH C 12 2012 2012 HOH HOH . Q 5 HOH C 13 2013 2013 HOH HOH . Q 5 HOH C 14 2014 2014 HOH HOH . Q 5 HOH C 15 2015 2015 HOH HOH . Q 5 HOH C 16 2016 2016 HOH HOH . Q 5 HOH C 17 2017 2017 HOH HOH . Q 5 HOH C 18 2018 2018 HOH HOH . Q 5 HOH C 19 2019 2019 HOH HOH . Q 5 HOH C 20 2020 2020 HOH HOH . Q 5 HOH C 21 2021 2021 HOH HOH . Q 5 HOH C 22 2022 2022 HOH HOH . Q 5 HOH C 23 2023 2023 HOH HOH . Q 5 HOH C 24 2024 2024 HOH HOH . Q 5 HOH C 25 2025 2025 HOH HOH . Q 5 HOH C 26 2026 2026 HOH HOH . Q 5 HOH C 27 2027 2027 HOH HOH . Q 5 HOH C 28 2028 2028 HOH HOH . Q 5 HOH C 29 2029 2029 HOH HOH . Q 5 HOH C 30 2030 2030 HOH HOH . Q 5 HOH C 31 2031 2031 HOH HOH . Q 5 HOH C 32 2032 2032 HOH HOH . Q 5 HOH C 33 2033 2033 HOH HOH . Q 5 HOH C 34 2034 2034 HOH HOH . Q 5 HOH C 35 2035 2035 HOH HOH . Q 5 HOH C 36 2036 2036 HOH HOH . Q 5 HOH C 37 2037 2037 HOH HOH . Q 5 HOH C 38 2038 2038 HOH HOH . Q 5 HOH C 39 2039 2039 HOH HOH . Q 5 HOH C 40 2040 2040 HOH HOH . Q 5 HOH C 41 2041 2041 HOH HOH . Q 5 HOH C 42 2042 2042 HOH HOH . R 5 HOH D 1 2001 2001 HOH HOH . R 5 HOH D 2 2002 2002 HOH HOH . R 5 HOH D 3 2003 2003 HOH HOH . R 5 HOH D 4 2004 2004 HOH HOH . R 5 HOH D 5 2005 2005 HOH HOH . R 5 HOH D 6 2006 2006 HOH HOH . R 5 HOH D 7 2007 2007 HOH HOH . R 5 HOH D 8 2008 2008 HOH HOH . R 5 HOH D 9 2009 2009 HOH HOH . R 5 HOH D 10 2010 2010 HOH HOH . R 5 HOH D 11 2011 2011 HOH HOH . R 5 HOH D 12 2012 2012 HOH HOH . R 5 HOH D 13 2013 2013 HOH HOH . R 5 HOH D 14 2014 2014 HOH HOH . R 5 HOH D 15 2015 2015 HOH HOH . R 5 HOH D 16 2016 2016 HOH HOH . R 5 HOH D 17 2017 2017 HOH HOH . R 5 HOH D 18 2018 2018 HOH HOH . R 5 HOH D 19 2019 2019 HOH HOH . R 5 HOH D 20 2020 2020 HOH HOH . R 5 HOH D 21 2021 2021 HOH HOH . R 5 HOH D 22 2022 2022 HOH HOH . R 5 HOH D 23 2023 2023 HOH HOH . R 5 HOH D 24 2024 2024 HOH HOH . R 5 HOH D 25 2025 2025 HOH HOH . R 5 HOH D 26 2026 2026 HOH HOH . R 5 HOH D 27 2027 2027 HOH HOH . R 5 HOH D 28 2028 2028 HOH HOH . R 5 HOH D 29 2029 2029 HOH HOH . R 5 HOH D 30 2030 2030 HOH HOH . S 5 HOH F 1 2001 2001 HOH HOH . S 5 HOH F 2 2002 2002 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 15.762 _atom_site.Cartn_y 41.692 _atom_site.Cartn_z 118.118 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1000 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 155 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #