data_4CYM # _model_server_result.job_id H6uVK3XPOWwBJYA6EJyKPA _model_server_result.datetime_utc '2025-01-03 06:33:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1199}' # _entry.id 4CYM # _exptl.entry_id 4CYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CYM _cell.length_a 144.445 _cell.length_b 144.445 _cell.length_c 135.68 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,M,P 1 1,2 B,E,I,J,N,Q 2 1 C,F,K,L,O,R 2 3 C,F,K,L,O,R 3 1 B,E,I,J,N,Q 3 4 A,D,G,H,M,P 4 1 B,E,I,J,N,Q 5 1 C,F,K,L,O,R 6 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 5_545 x-y,-y-1,-z+1/3 1 0 0 0 -1 0 0 0 -1 72.2225 -125.093039 45.226667 4 'crystal symmetry operation' 5_445 x-y-1,-y-1,-z+1/3 1 0 0 0 -1 0 0 0 -1 -72.2225 -125.093039 45.226667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 44 A THR 39 1_555 H MG MG . A MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc2 A OG1 THR 62 A THR 57 1_555 H MG MG . A MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 G O3G GCP . A GCP 1198 1_555 H MG MG . A MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 G O2B GCP . A GCP 1198 1_555 H MG MG . A MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 H MG MG . A MG 1199 1_555 M O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc6 H MG MG . A MG 1199 1_555 M O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc7 B OG1 THR 44 B THR 39 1_555 J MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 B OG1 THR 62 B THR 57 1_555 J MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc9 I O3G GCP . B GCP 1198 1_555 J MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc10 I O2B GCP . B GCP 1198 1_555 J MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc11 J MG MG . B MG 1199 1_555 N O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 J MG MG . B MG 1199 1_555 N O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc13 C OG1 THR 44 C THR 39 1_555 L MG MG . C MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 C OG1 THR 62 C THR 57 1_555 L MG MG . C MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc15 K O2B GCP . C GCP 1198 1_555 L MG MG . C MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc16 K O3G GCP . C GCP 1198 1_555 L MG MG . C MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc17 L MG MG . C MG 1199 1_555 O O HOH . C HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc18 L MG MG . C MG 1199 1_555 O O HOH . C HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4CYM _atom_sites.fract_transf_matrix[1][1] 0.006923 _atom_sites.fract_transf_matrix[1][2] 0.003997 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GCP A 1 1198 1198 GCP GCP . H 4 MG A 1 1199 1199 MG MG . I 3 GCP B 1 1198 1198 GCP GCP . J 4 MG B 1 1199 1199 MG MG . K 3 GCP C 1 1198 1198 GCP GCP . L 4 MG C 1 1199 1199 MG MG . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2008 2008 HOH HOH . M 5 HOH A 7 2009 2009 HOH HOH . M 5 HOH A 8 2010 2010 HOH HOH . M 5 HOH A 9 2011 2011 HOH HOH . M 5 HOH A 10 2012 2012 HOH HOH . M 5 HOH A 11 2013 2013 HOH HOH . M 5 HOH A 12 2014 2014 HOH HOH . M 5 HOH A 13 2015 2015 HOH HOH . M 5 HOH A 14 2016 2016 HOH HOH . M 5 HOH A 15 2017 2017 HOH HOH . M 5 HOH A 16 2018 2018 HOH HOH . M 5 HOH A 17 2019 2019 HOH HOH . M 5 HOH A 18 2020 2020 HOH HOH . M 5 HOH A 19 2021 2021 HOH HOH . M 5 HOH A 20 2022 2022 HOH HOH . M 5 HOH A 21 2023 2023 HOH HOH . M 5 HOH A 22 2024 2024 HOH HOH . M 5 HOH A 23 2025 2025 HOH HOH . M 5 HOH A 24 2026 2026 HOH HOH . M 5 HOH A 25 2027 2027 HOH HOH . M 5 HOH A 26 2028 2028 HOH HOH . M 5 HOH A 27 2029 2029 HOH HOH . M 5 HOH A 28 2030 2030 HOH HOH . M 5 HOH A 29 2031 2031 HOH HOH . M 5 HOH A 30 2032 2032 HOH HOH . M 5 HOH A 31 2033 2033 HOH HOH . M 5 HOH A 32 2034 2034 HOH HOH . M 5 HOH A 33 2035 2035 HOH HOH . M 5 HOH A 34 2036 2036 HOH HOH . M 5 HOH A 35 2037 2037 HOH HOH . M 5 HOH A 36 2038 2038 HOH HOH . M 5 HOH A 37 2039 2039 HOH HOH . M 5 HOH A 38 2040 2040 HOH HOH . M 5 HOH A 39 2043 2043 HOH HOH . M 5 HOH A 40 2044 2044 HOH HOH . N 5 HOH B 1 2001 2001 HOH HOH . N 5 HOH B 2 2002 2002 HOH HOH . N 5 HOH B 3 2003 2003 HOH HOH . N 5 HOH B 4 2004 2004 HOH HOH . N 5 HOH B 5 2006 2006 HOH HOH . N 5 HOH B 6 2007 2007 HOH HOH . N 5 HOH B 7 2008 2008 HOH HOH . N 5 HOH B 8 2009 2009 HOH HOH . N 5 HOH B 9 2010 2010 HOH HOH . N 5 HOH B 10 2011 2011 HOH HOH . N 5 HOH B 11 2012 2012 HOH HOH . N 5 HOH B 12 2013 2013 HOH HOH . N 5 HOH B 13 2014 2014 HOH HOH . N 5 HOH B 14 2015 2015 HOH HOH . N 5 HOH B 15 2016 2016 HOH HOH . N 5 HOH B 16 2017 2017 HOH HOH . N 5 HOH B 17 2018 2018 HOH HOH . N 5 HOH B 18 2033 2033 HOH HOH . O 5 HOH C 1 2001 2001 HOH HOH . O 5 HOH C 2 2002 2002 HOH HOH . O 5 HOH C 3 2003 2003 HOH HOH . O 5 HOH C 4 2004 2004 HOH HOH . O 5 HOH C 5 2005 2005 HOH HOH . O 5 HOH C 6 2006 2006 HOH HOH . O 5 HOH C 7 2007 2007 HOH HOH . O 5 HOH C 8 2008 2008 HOH HOH . O 5 HOH C 9 2009 2009 HOH HOH . O 5 HOH C 10 2010 2010 HOH HOH . O 5 HOH C 11 2011 2011 HOH HOH . O 5 HOH C 12 2012 2012 HOH HOH . O 5 HOH C 13 2013 2013 HOH HOH . O 5 HOH C 14 2014 2014 HOH HOH . O 5 HOH C 15 2015 2015 HOH HOH . O 5 HOH C 16 2016 2016 HOH HOH . O 5 HOH C 17 2017 2017 HOH HOH . O 5 HOH C 18 2018 2018 HOH HOH . O 5 HOH C 19 2019 2019 HOH HOH . P 5 HOH D 1 2001 2001 HOH HOH . P 5 HOH D 2 2002 2002 HOH HOH . P 5 HOH D 3 2005 2005 HOH HOH . P 5 HOH D 4 2006 2006 HOH HOH . P 5 HOH D 5 2007 2007 HOH HOH . P 5 HOH D 6 2008 2008 HOH HOH . P 5 HOH D 7 2009 2009 HOH HOH . P 5 HOH D 8 2010 2010 HOH HOH . P 5 HOH D 9 2011 2011 HOH HOH . P 5 HOH D 10 2012 2012 HOH HOH . P 5 HOH D 11 2013 2013 HOH HOH . P 5 HOH D 12 2014 2014 HOH HOH . P 5 HOH D 13 2015 2015 HOH HOH . P 5 HOH D 14 2016 2016 HOH HOH . P 5 HOH D 15 2017 2017 HOH HOH . P 5 HOH D 16 2018 2018 HOH HOH . P 5 HOH D 17 2019 2019 HOH HOH . P 5 HOH D 18 2020 2020 HOH HOH . P 5 HOH D 19 2021 2021 HOH HOH . P 5 HOH D 20 2022 2022 HOH HOH . P 5 HOH D 21 2023 2023 HOH HOH . P 5 HOH D 22 2024 2024 HOH HOH . P 5 HOH D 23 2026 2026 HOH HOH . P 5 HOH D 24 2027 2027 HOH HOH . P 5 HOH D 25 2028 2028 HOH HOH . P 5 HOH D 26 2029 2029 HOH HOH . P 5 HOH D 27 2030 2030 HOH HOH . P 5 HOH D 28 2031 2031 HOH HOH . P 5 HOH D 29 2033 2033 HOH HOH . P 5 HOH D 30 2034 2034 HOH HOH . Q 5 HOH E 1 2001 2001 HOH HOH . Q 5 HOH E 2 2002 2002 HOH HOH . Q 5 HOH E 3 2003 2003 HOH HOH . Q 5 HOH E 4 2004 2004 HOH HOH . Q 5 HOH E 5 2005 2005 HOH HOH . Q 5 HOH E 6 2006 2006 HOH HOH . Q 5 HOH E 7 2007 2007 HOH HOH . Q 5 HOH E 8 2008 2008 HOH HOH . Q 5 HOH E 9 2009 2009 HOH HOH . Q 5 HOH E 10 2010 2010 HOH HOH . R 5 HOH F 1 2001 2001 HOH HOH . R 5 HOH F 2 2002 2002 HOH HOH . R 5 HOH F 3 2003 2003 HOH HOH . R 5 HOH F 4 2004 2004 HOH HOH . R 5 HOH F 5 2005 2005 HOH HOH . R 5 HOH F 6 2006 2006 HOH HOH . R 5 HOH F 7 2007 2007 HOH HOH . R 5 HOH F 8 2008 2008 HOH HOH . R 5 HOH F 9 2009 2009 HOH HOH . R 5 HOH F 10 2010 2010 HOH HOH . R 5 HOH F 11 2011 2011 HOH HOH . R 5 HOH F 12 2012 2012 HOH HOH . R 5 HOH F 13 2014 2014 HOH HOH . R 5 HOH F 14 2015 2015 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 7.956 _atom_site.Cartn_y -67.968 _atom_site.Cartn_z 6.164 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1199 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #