data_4CYU # _model_server_result.job_id XpczSjD1dSJAz8AOoHotmg _model_server_result.datetime_utc '2024-11-05 08:03:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1159}' # _entry.id 4CYU # _exptl.entry_id 4CYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.44 _cell.angle_gamma 90 _cell.entry_id 4CYU _cell.length_a 62.002 _cell.length_b 94.263 _cell.length_c 62.989 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,S 1 1 B,I,J,K,L,T 2 1 C,M,N,O,U 3 1 D,P,Q,R,V 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 83 B CYS 80 1_555 D SG CYS 83 D CYS 80 2_746 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc1 A OD1 ASP 98 A ASP 95 1_555 E MG MG . A MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A OD2 ASP 98 A ASP 95 1_555 F MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A OD1 ASP 100 A ASP 97 1_555 E MG MG . A MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc4 A OD2 ASP 100 A ASP 97 1_555 F MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc5 E MG MG . A MG 170 1_555 G O1A APC . A APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 E MG MG . A MG 170 1_555 G O1B APC . A APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 E MG MG . A MG 170 1_555 S O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 F MG MG . A MG 171 1_555 G O1B APC . A APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc9 F MG MG . A MG 171 1_555 G O1G APC . A APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc10 B OE2 GLU 81 B GLU 78 1_555 I MG MG . B MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc11 B OD1 ASP 98 B ASP 95 1_555 I MG MG . B MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc12 B OD2 ASP 98 B ASP 95 1_555 J MG MG . B MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc13 B OD1 ASP 100 B ASP 97 1_555 I MG MG . B MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc14 B OD2 ASP 100 B ASP 97 1_555 J MG MG . B MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc15 I MG MG . B MG 170 1_555 K O1A APC . B APC 1159 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 I MG MG . B MG 170 1_555 K O1A APC . B APC 1159 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.603 ? metalc ? metalc17 I MG MG . B MG 170 1_555 T O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc18 J MG MG . B MG 171 1_555 K O1B APC . B APC 1159 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.813 ? metalc ? metalc19 J MG MG . B MG 171 1_555 K O2B APC . B APC 1159 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.641 ? metalc ? metalc20 J MG MG . B MG 171 1_555 K O1B APC . B APC 1159 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.47 ? metalc ? metalc21 J MG MG . B MG 171 1_555 K O1G APC . B APC 1159 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.858 ? metalc ? metalc22 C OD1 ASP 98 C ASP 95 1_555 M MG MG . C MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc23 C OD2 ASP 98 C ASP 95 1_555 N MG MG . C MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc24 C OD1 ASP 100 C ASP 97 1_555 M MG MG . C MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc25 C OD2 ASP 100 C ASP 97 1_555 N MG MG . C MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc26 M MG MG . C MG 170 1_555 O O1B APC . C APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc27 M MG MG . C MG 170 1_555 O O1A APC . C APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc28 M MG MG . C MG 170 1_555 U O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc29 M MG MG . C MG 170 1_555 U O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc30 N MG MG . C MG 171 1_555 O O1G APC . C APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc31 N MG MG . C MG 171 1_555 O O1B APC . C APC 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc32 D OD1 ASP 98 D ASP 95 1_555 P MG MG . D MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc33 D OD2 ASP 98 D ASP 95 1_555 Q MG MG . D MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc34 D OD1 ASP 100 D ASP 97 1_555 P MG MG . D MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc35 D OD2 ASP 100 D ASP 97 1_555 Q MG MG . D MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc36 P MG MG . D MG 170 1_555 R O1B APC . D APC 1158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.207 ? metalc ? metalc37 P MG MG . D MG 170 1_555 R O1A APC . D APC 1158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.074 ? metalc ? metalc38 P MG MG . D MG 170 1_555 R O2B APC . D APC 1158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.438 ? metalc ? metalc39 P MG MG . D MG 170 1_555 R O1A APC . D APC 1158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.877 ? metalc ? metalc40 P MG MG . D MG 170 1_555 V O HOH . D HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc41 Q MG MG . D MG 171 1_555 R O1G APC . D APC 1158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.841 ? metalc ? metalc42 Q MG MG . D MG 171 1_555 R O1B APC . D APC 1158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.418 ? metalc ? metalc43 Q MG MG . D MG 171 1_555 R O2B APC . D APC 1158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.393 ? metalc ? metalc44 Q MG MG . D MG 171 1_555 R O1B APC . D APC 1158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.848 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 385 n n C C2 TRS sing 386 n n C C3 TRS sing 387 n n C N TRS sing 388 n n C1 O1 TRS sing 389 n n C1 H11 TRS sing 390 n n C1 H12 TRS sing 391 n n C2 O2 TRS sing 392 n n C2 H21 TRS sing 393 n n C2 H22 TRS sing 394 n n C3 O3 TRS sing 395 n n C3 H31 TRS sing 396 n n C3 H32 TRS sing 397 n n N HN1 TRS sing 398 n n N HN2 TRS sing 399 n n N HN3 TRS sing 400 n n O1 HO1 TRS sing 401 n n O2 HO2 TRS sing 402 n n O3 HO3 TRS sing 403 n n # _atom_sites.entry_id 4CYU _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006661 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 170 170 MG MG . F 3 MG A 1 171 171 MG MG . G 4 APC A 1 1158 1158 APC APC . H 5 TRS A 1 1159 1159 TRS TRS . I 3 MG B 1 170 170 MG MG . J 3 MG B 1 171 171 MG MG . K 4 APC B 1 1159 1159 APC APC . L 5 TRS B 1 1160 1160 TRS TRS . M 3 MG C 1 170 170 MG MG . N 3 MG C 1 171 171 MG MG . O 4 APC C 1 1158 1158 APC APC . P 3 MG D 1 170 170 MG MG . Q 3 MG D 1 171 171 MG MG . R 4 APC D 1 1158 1158 APC APC . S 6 HOH A 1 2001 2001 HOH HOH . S 6 HOH A 2 2002 2002 HOH HOH . S 6 HOH A 3 2003 2003 HOH HOH . S 6 HOH A 4 2004 2004 HOH HOH . S 6 HOH A 5 2005 2005 HOH HOH . T 6 HOH B 1 2001 2001 HOH HOH . T 6 HOH B 2 2002 2002 HOH HOH . T 6 HOH B 3 2003 2003 HOH HOH . U 6 HOH C 1 2001 2001 HOH HOH . U 6 HOH C 2 2002 2002 HOH HOH . U 6 HOH C 3 2003 2003 HOH HOH . V 6 HOH D 1 2001 2001 HOH HOH . V 6 HOH D 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . H 5 39.132 -34.541 17.354 1 87.01 ? C TRS 1159 A 1 HETATM 2 C C1 TRS . . . H 5 37.832 -35.178 17.827 1 89.08 ? C1 TRS 1159 A 1 HETATM 3 C C2 TRS . . . H 5 40.329 -35.443 17.682 1 90.63 ? C2 TRS 1159 A 1 HETATM 4 C C3 TRS . . . H 5 38.984 -34.295 15.859 1 86.39 ? C3 TRS 1159 A 1 HETATM 5 N N TRS . . . H 5 39.374 -33.247 18.057 1 82.63 ? N TRS 1159 A 1 HETATM 6 O O1 TRS . . . H 5 36.707 -34.298 17.704 1 91.78 ? O1 TRS 1159 A 1 HETATM 7 O O2 TRS . . . H 5 40.024 -36.82 17.427 1 95.8 ? O2 TRS 1159 A 1 HETATM 8 O O3 TRS . . . H 5 40.23 -33.831 15.329 1 93.96 ? O3 TRS 1159 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #