data_4CZ0 # _model_server_result.job_id FWjnIZHz-khid9l0cnJylw _model_server_result.datetime_utc '2025-01-12 09:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 4CZ0 # _exptl.entry_id 4CZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.23 _cell.angle_gamma 90 _cell.entry_id 4CZ0 _cell.length_a 69.113 _cell.length_b 216.085 _cell.length_c 81.486 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 GAL NGS C1 O1 . O4 HO4 . sing 2 ? 3 3 2 SIA GAL C2 O2 . O3 HO3 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NGS 1 G 1 NGS A 703 NGS 3 n G GAL 2 G 2 GAL A 702 GAL 3 n G SIA 3 G 3 SIA A 701 SIA 4 n H NAG 1 H 1 NAG B 201 NAG 4 n H NAG 2 H 2 NAG B 202 NAG 4 n H BMA 3 H 3 BMA B 203 BMA 4 n H MAN 4 H 4 MAN B 204 MAN 4 n H MAN 5 H 5 MAN B 207 MAN 3 n I NGS 1 I 1 NGS C 703 NGS 3 n I GAL 2 I 2 GAL C 702 GAL 3 n I SIA 3 I 3 SIA C 701 SIA 4 n J NAG 1 J 1 NAG D 201 NAG 4 n J NAG 2 J 2 NAG D 202 NAG 4 n J BMA 3 J 3 BMA D 203 BMA 4 n J MAN 4 J 4 MAN D 204 MAN 4 n J MAN 5 J 5 MAN D 207 MAN 3 n K NGS 1 K 1 NGS E 703 NGS 3 n K GAL 2 K 2 GAL E 702 GAL 3 n K SIA 3 K 3 SIA E 701 SIA 4 n L NAG 1 L 1 NAG F 201 NAG 4 n L NAG 2 L 2 NAG F 202 NAG 4 n L BMA 3 L 3 BMA F 203 BMA 4 n L MAN 4 L 4 MAN F 204 MAN 4 n L MAN 5 L 5 MAN F 207 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 270 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 54 A CYS 64 1_555 A SG CYS 66 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 87 A CYS 97 1_555 A SG CYS 130 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 274 A CYS 281 1_555 A SG CYS 298 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 4 C CYS 14 1_555 D SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 42 C CYS 52 1_555 C SG CYS 270 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 C SG CYS 54 C CYS 64 1_555 C SG CYS 66 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 C SG CYS 87 C CYS 97 1_555 C SG CYS 130 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 274 C CYS 281 1_555 C SG CYS 298 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 E SG CYS 4 E CYS 14 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 E SG CYS 42 E CYS 52 1_555 E SG CYS 270 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 E SG CYS 54 E CYS 64 1_555 E SG CYS 66 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 E SG CYS 87 E CYS 97 1_555 E SG CYS 130 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 E SG CYS 274 E CYS 281 1_555 E SG CYS 298 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf18 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 28 A ASN 38 1_555 N C1 NAG . A NAG 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 235 A ASN 242 1_555 M C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B ND2 ASN 82 B ASN 82 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C ND2 ASN 28 C ASN 38 1_555 P C1 NAG . C NAG 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C ND2 ASN 235 C ASN 242 1_555 O C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 D ND2 ASN 82 D ASN 82 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 E ND2 ASN 28 E ASN 38 1_555 R C1 NAG . E NAG 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 E ND2 ASN 235 E ASN 242 1_555 Q C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 F ND2 ASN 82 F ASN 82 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 F ND2 ASN 154 F ASN 154 1_555 S C1 NAG . F NAG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale11 G O4 NGS . G NGS 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 G O3 GAL . G GAL 2 1_555 G C2 SIA . G SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale13 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale15 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale17 I O4 NGS . I NGS 1 1_555 I C1 GAL . I GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale18 I O3 GAL . I GAL 2 1_555 I C2 SIA . I SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale19 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale21 J O3 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale22 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale23 K O4 NGS . K NGS 1 1_555 K C1 GAL . K GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale24 K O3 GAL . K GAL 2 1_555 K C2 SIA . K SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale25 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale26 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale27 L O3 BMA . L BMA 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale28 L O6 BMA . L BMA 3 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 307 n n C1 O1 NAG sing 308 n n C1 O5 NAG sing 309 n n C1 H1 NAG sing 310 n n C2 C3 NAG sing 311 n n C2 N2 NAG sing 312 n n C2 H2 NAG sing 313 n n C3 C4 NAG sing 314 n n C3 O3 NAG sing 315 n n C3 H3 NAG sing 316 n n C4 C5 NAG sing 317 n n C4 O4 NAG sing 318 n n C4 H4 NAG sing 319 n n C5 C6 NAG sing 320 n n C5 O5 NAG sing 321 n n C5 H5 NAG sing 322 n n C6 O6 NAG sing 323 n n C6 H61 NAG sing 324 n n C6 H62 NAG sing 325 n n C7 C8 NAG sing 326 n n C7 N2 NAG sing 327 n n C7 O7 NAG doub 328 n n C8 H81 NAG sing 329 n n C8 H82 NAG sing 330 n n C8 H83 NAG sing 331 n n N2 HN2 NAG sing 332 n n O1 HO1 NAG sing 333 n n O3 HO3 NAG sing 334 n n O4 HO4 NAG sing 335 n n O6 HO6 NAG sing 336 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CZ0 _atom_sites.fract_transf_matrix[1][1] 0.014469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG A 1 401 401 NAG NAG . N 5 NAG A 1 420 420 NAG NAG . O 5 NAG C 1 401 401 NAG NAG . P 5 NAG C 1 420 420 NAG NAG . Q 5 NAG E 1 401 401 NAG NAG . R 5 NAG E 1 420 420 NAG NAG . S 5 NAG F 1 211 211 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 5 15.71 20.751 -5.321 1 129.52 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . M 5 14.766 20.625 -6.52 1 132.7 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . M 5 15.522 20.293 -7.81 1 136.76 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . M 5 16.763 21.165 -7.997 1 138.41 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . M 5 17.593 21.219 -6.712 1 135.02 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . M 5 18.762 22.19 -6.844 1 136.62 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . M 5 12.474 19.765 -6.624 1 132.13 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . M 5 11.552 18.629 -6.29 1 130.26 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . M 5 13.751 19.615 -6.267 1 131.22 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . M 5 14.663 20.469 -8.915 1 139.91 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . M 5 17.535 20.653 -9.061 1 142.01 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . M 5 16.779 21.63 -5.628 1 131.5 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . M 5 19.511 22.189 -5.649 1 133.63 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . M 5 12.035 20.763 -7.199 1 134.46 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #