data_4CZ8 # _model_server_result.job_id IAQQxF622RnKB7gf1dzOKQ _model_server_result.datetime_utc '2024-11-21 13:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1423}' # _entry.id 4CZ8 # _exptl.entry_id 4CZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.19 _cell.angle_gamma 90 _cell.entry_id 4CZ8 _cell.length_a 54.493 _cell.length_b 107.944 _cell.length_c 107.928 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SER 20 A SER 20 1_555 A N MSE 21 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 21 A MSE 21 1_555 A N LEU 22 A LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C ASN 85 A ASN 85 1_555 A N MSE 86 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 86 A MSE 86 1_555 A N PRO 87 A PRO 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 A C SER 171 A SER 171 1_555 A N MSE 172 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 172 A MSE 172 1_555 A N LEU 173 A LEU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C GLU 312 A GLU 312 1_555 A N MSE 313 A MSE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 313 A MSE 313 1_555 A N ASN 314 A ASN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C VAL 332 A VAL 332 1_555 A N MSE 333 A MSE 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MSE 333 A MSE 333 1_555 A N ILE 334 A ILE 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C ILE 393 A ILE 393 1_555 A N MSE 394 A MSE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C MSE 394 A MSE 394 1_555 A N ALA 395 A ALA 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C SER 20 B SER 20 1_555 B N MSE 21 B MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C MSE 21 B MSE 21 1_555 B N LEU 22 B LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C ASN 85 B ASN 85 1_555 B N MSE 86 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C MSE 86 B MSE 86 1_555 B N PRO 87 B PRO 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale18 B C SER 171 B SER 171 1_555 B N MSE 172 B MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C MSE 172 B MSE 172 1_555 B N LEU 173 B LEU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C GLU 312 B GLU 312 1_555 B N MSE 313 B MSE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C MSE 313 B MSE 313 1_555 B N ASN 314 B ASN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C VAL 332 B VAL 332 1_555 B N MSE 333 B MSE 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 B C MSE 333 B MSE 333 1_555 B N ILE 334 B ILE 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 B C ILE 393 B ILE 393 1_555 B N MSE 394 B MSE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C MSE 394 B MSE 394 1_555 B N ALA 395 B ALA 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4CZ8 _atom_sites.fract_transf_matrix[1][1] 0.018351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 1423 1423 BOG BOG . D 3 PTY A 1 1424 1424 PTY PTY . E 4 TAM A 1 1425 1425 TAM TAM . F 4 TAM A 1 1426 1426 TAM TAM . G 5 FLC B 1 1423 1423 FLC FLC . H 5 FLC B 1 1424 1424 FLC FLC . I 4 TAM B 1 1425 1425 TAM TAM . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH B 1 2001 2001 HOH HOH . K 6 HOH B 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 2 -15.829 -4.523 -15.56 1 188.41 ? C1 BOG 1423 A 1 HETATM 2 O O1 BOG . . . C 2 -15.911 -5.909 -15.778 1 180.39 ? O1 BOG 1423 A 1 HETATM 3 C C2 BOG . . . C 2 -16.153 -3.807 -16.854 1 172.25 ? C2 BOG 1423 A 1 HETATM 4 O O2 BOG . . . C 2 -15.186 -4.126 -17.824 1 113.96 ? O2 BOG 1423 A 1 HETATM 5 C C3 BOG . . . C 2 -16.161 -2.313 -16.623 1 170.15 ? C3 BOG 1423 A 1 HETATM 6 O O3 BOG . . . C 2 -16.598 -1.657 -17.789 1 142.56 ? O3 BOG 1423 A 1 HETATM 7 C C4 BOG . . . C 2 -17.099 -2.006 -15.479 1 198.12 ? C4 BOG 1423 A 1 HETATM 8 O O4 BOG . . . C 2 -17.078 -0.627 -15.196 1 199.54 ? O4 BOG 1423 A 1 HETATM 9 C C5 BOG . . . C 2 -16.643 -2.794 -14.273 1 195.28 ? C5 BOG 1423 A 1 HETATM 10 O O5 BOG . . . C 2 -16.755 -4.169 -14.558 1 203.65 ? O5 BOG 1423 A 1 HETATM 11 C C6 BOG . . . C 2 -17.513 -2.461 -13.081 1 187.26 ? C6 BOG 1423 A 1 HETATM 12 O O6 BOG . . . C 2 -17.866 -1.097 -13.107 1 177.47 ? O6 BOG 1423 A 1 HETATM 13 C C1' BOG . . . C 2 -14.696 -6.605 -15.63 1 125.29 ? C1' BOG 1423 A 1 HETATM 14 C C2' BOG . . . C 2 -14.929 -8.065 -15.954 1 147.7 ? C2' BOG 1423 A 1 HETATM 15 C C3' BOG . . . C 2 -13.624 -8.732 -16.331 1 137.07 ? C3' BOG 1423 A 1 HETATM 16 C C4' BOG . . . C 2 -13.87 -9.71 -17.46 1 134.36 ? C4' BOG 1423 A 1 HETATM 17 C C5' BOG . . . C 2 -12.827 -10.804 -17.43 1 138.83 ? C5' BOG 1423 A 1 HETATM 18 C C6' BOG . . . C 2 -13.279 -11.904 -16.494 1 158.65 ? C6' BOG 1423 A 1 HETATM 19 C C7' BOG . . . C 2 -12.309 -13.063 -16.561 1 146.36 ? C7' BOG 1423 A 1 HETATM 20 C C8' BOG . . . C 2 -10.95 -12.618 -16.066 1 109.53 ? C8' BOG 1423 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 20 #