data_4CZ8 # _model_server_result.job_id 6jEgEVI6LTUMRVhTCcCcaA _model_server_result.datetime_utc '2024-11-21 14:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1424}' # _entry.id 4CZ8 # _exptl.entry_id 4CZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.19 _cell.angle_gamma 90 _cell.entry_id 4CZ8 _cell.length_a 54.493 _cell.length_b 107.944 _cell.length_c 107.928 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SER 20 A SER 20 1_555 A N MSE 21 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 21 A MSE 21 1_555 A N LEU 22 A LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C ASN 85 A ASN 85 1_555 A N MSE 86 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 86 A MSE 86 1_555 A N PRO 87 A PRO 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 A C SER 171 A SER 171 1_555 A N MSE 172 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 172 A MSE 172 1_555 A N LEU 173 A LEU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C GLU 312 A GLU 312 1_555 A N MSE 313 A MSE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 313 A MSE 313 1_555 A N ASN 314 A ASN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C VAL 332 A VAL 332 1_555 A N MSE 333 A MSE 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MSE 333 A MSE 333 1_555 A N ILE 334 A ILE 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C ILE 393 A ILE 393 1_555 A N MSE 394 A MSE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C MSE 394 A MSE 394 1_555 A N ALA 395 A ALA 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C SER 20 B SER 20 1_555 B N MSE 21 B MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C MSE 21 B MSE 21 1_555 B N LEU 22 B LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C ASN 85 B ASN 85 1_555 B N MSE 86 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C MSE 86 B MSE 86 1_555 B N PRO 87 B PRO 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale18 B C SER 171 B SER 171 1_555 B N MSE 172 B MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C MSE 172 B MSE 172 1_555 B N LEU 173 B LEU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C GLU 312 B GLU 312 1_555 B N MSE 313 B MSE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C MSE 313 B MSE 313 1_555 B N ASN 314 B ASN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C VAL 332 B VAL 332 1_555 B N MSE 333 B MSE 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 B C MSE 333 B MSE 333 1_555 B N ILE 334 B ILE 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 B C ILE 393 B ILE 393 1_555 B N MSE 394 B MSE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C MSE 394 B MSE 394 1_555 B N ALA 395 B ALA 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 329 n n C1 C6 PTY sing 330 n n C1 HC11 PTY sing 331 n n C1 HC12 PTY sing 332 n n C2 C3 PTY sing 333 n n C2 N1 PTY sing 334 n n C2 HC21 PTY sing 335 n n C2 HC22 PTY sing 336 n n C3 O11 PTY sing 337 n n C3 HC31 PTY sing 338 n n C3 HC32 PTY sing 339 n n O4 C30 PTY sing 340 n n C5 C6 PTY sing 341 n n C5 O14 PTY sing 342 n n C5 HC51 PTY sing 343 n n C5 HC52 PTY sing 344 n n C6 O7 PTY sing 345 n n C6 HC6 PTY sing 346 n n O7 C8 PTY sing 347 n n C8 O10 PTY doub 348 n n C8 C11 PTY sing 349 n n C11 C12 PTY sing 350 n n C11 H111 PTY sing 351 n n C11 H112 PTY sing 352 n n C12 C13 PTY sing 353 n n C12 H121 PTY sing 354 n n C12 H122 PTY sing 355 n n C13 C14 PTY sing 356 n n C13 H131 PTY sing 357 n n C13 H132 PTY sing 358 n n C14 C15 PTY sing 359 n n C14 H141 PTY sing 360 n n C14 H142 PTY sing 361 n n C15 C16 PTY sing 362 n n C15 H151 PTY sing 363 n n C15 H152 PTY sing 364 n n C16 C17 PTY sing 365 n n C16 H161 PTY sing 366 n n C16 H162 PTY sing 367 n n C17 C18 PTY sing 368 n n C17 H171 PTY sing 369 n n C17 H172 PTY sing 370 n n C18 C19 PTY sing 371 n n C18 H181 PTY sing 372 n n C18 H182 PTY sing 373 n n C19 C20 PTY sing 374 n n C19 H191 PTY sing 375 n n C19 H192 PTY sing 376 n n C20 C21 PTY sing 377 n n C20 H201 PTY sing 378 n n C20 H202 PTY sing 379 n n C21 C22 PTY sing 380 n n C21 H211 PTY sing 381 n n C21 H212 PTY sing 382 n n C22 C23 PTY sing 383 n n C22 H221 PTY sing 384 n n C22 H222 PTY sing 385 n n C23 C24 PTY sing 386 n n C23 H231 PTY sing 387 n n C23 H232 PTY sing 388 n n C24 C25 PTY sing 389 n n C24 H241 PTY sing 390 n n C24 H242 PTY sing 391 n n C25 C26 PTY sing 392 n n C25 H251 PTY sing 393 n n C25 H252 PTY sing 394 n n C26 C27 PTY sing 395 n n C26 H261 PTY sing 396 n n C26 H262 PTY sing 397 n n C27 C28 PTY sing 398 n n C27 H271 PTY sing 399 n n C27 H272 PTY sing 400 n n C28 C29 PTY sing 401 n n C28 H281 PTY sing 402 n n C28 H282 PTY sing 403 n n C29 H291 PTY sing 404 n n C29 H292 PTY sing 405 n n C29 H293 PTY sing 406 n n C30 C31 PTY sing 407 n n C30 O30 PTY doub 408 n n C31 C32 PTY sing 409 n n C31 H311 PTY sing 410 n n C31 H312 PTY sing 411 n n C32 C33 PTY sing 412 n n C32 H321 PTY sing 413 n n C32 H322 PTY sing 414 n n C33 C34 PTY sing 415 n n C33 H331 PTY sing 416 n n C33 H332 PTY sing 417 n n C34 C35 PTY sing 418 n n C34 H341 PTY sing 419 n n C34 H342 PTY sing 420 n n C35 C36 PTY sing 421 n n C35 H351 PTY sing 422 n n C35 H352 PTY sing 423 n n C36 C37 PTY sing 424 n n C36 H361 PTY sing 425 n n C36 H362 PTY sing 426 n n C37 C38 PTY sing 427 n n C37 H371 PTY sing 428 n n C37 H372 PTY sing 429 n n C38 C39 PTY sing 430 n n C38 H381 PTY sing 431 n n C38 H382 PTY sing 432 n n C39 C40 PTY sing 433 n n C39 H391 PTY sing 434 n n C39 H392 PTY sing 435 n n C40 C41 PTY sing 436 n n C40 H401 PTY sing 437 n n C40 H402 PTY sing 438 n n C41 C42 PTY sing 439 n n C41 H411 PTY sing 440 n n C41 H412 PTY sing 441 n n C42 C43 PTY sing 442 n n C42 H421 PTY sing 443 n n C42 H422 PTY sing 444 n n C43 C44 PTY sing 445 n n C43 H431 PTY sing 446 n n C43 H432 PTY sing 447 n n C44 H441 PTY sing 448 n n C44 H442 PTY sing 449 n n C44 H443 PTY sing 450 n n P1 O11 PTY sing 451 n n P1 O12 PTY sing 452 n n P1 O13 PTY doub 453 n n P1 O14 PTY sing 454 n n O12 H12O PTY sing 455 n n N1 HN11 PTY sing 456 n n N1 HN12 PTY sing 457 n n # _atom_sites.entry_id 4CZ8 _atom_sites.fract_transf_matrix[1][1] 0.018351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 1423 1423 BOG BOG . D 3 PTY A 1 1424 1424 PTY PTY . E 4 TAM A 1 1425 1425 TAM TAM . F 4 TAM A 1 1426 1426 TAM TAM . G 5 FLC B 1 1423 1423 FLC FLC . H 5 FLC B 1 1424 1424 FLC FLC . I 4 TAM B 1 1425 1425 TAM TAM . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH B 1 2001 2001 HOH HOH . K 6 HOH B 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . D 3 13.097 -7.445 -32.018 1 156.93 ? C1 PTY 1424 A 1 HETATM 2 C C2 PTY . . . D 3 16.547 -13.495 -30.442 1 121.58 ? C2 PTY 1424 A 1 HETATM 3 C C3 PTY . . . D 3 17.301 -12.213 -30.143 1 127.07 ? C3 PTY 1424 A 1 HETATM 4 O O4 PTY . . . D 3 11.988 -6.721 -32.551 1 164.52 ? O4 PTY 1424 A 1 HETATM 5 C C5 PTY . . . D 3 13.325 -8.874 -30.007 1 138.86 ? C5 PTY 1424 A 1 HETATM 6 C C6 PTY . . . D 3 13.032 -7.456 -30.499 1 150.09 ? C6 PTY 1424 A 1 HETATM 7 O O7 PTY . . . D 3 11.753 -7.062 -30.068 1 139.43 ? O7 PTY 1424 A 1 HETATM 8 C C8 PTY . . . D 3 11.714 -6.484 -28.762 1 146.9 ? C8 PTY 1424 A 1 HETATM 9 O O10 PTY . . . D 3 12.704 -6.493 -28.062 1 169.22 ? O10 PTY 1424 A 1 HETATM 10 C C11 PTY . . . D 3 10.539 -5.582 -28.378 1 146.91 ? C11 PTY 1424 A 1 HETATM 11 C C12 PTY . . . D 3 10.049 -5.916 -26.939 1 133.75 ? C12 PTY 1424 A 1 HETATM 12 C C13 PTY . . . D 3 8.806 -5.069 -26.628 1 116.12 ? C13 PTY 1424 A 1 HETATM 13 C C14 PTY . . . D 3 8.673 -4.856 -25.107 1 101.16 ? C14 PTY 1424 A 1 HETATM 14 C C15 PTY . . . D 3 7.289 -4.209 -24.801 1 125.76 ? C15 PTY 1424 A 1 HETATM 15 C C16 PTY . . . D 3 7.487 -2.767 -24.276 1 124.46 ? C16 PTY 1424 A 1 HETATM 16 C C17 PTY . . . D 3 6.37 -2.441 -23.22 1 98.25 ? C17 PTY 1424 A 1 HETATM 17 C C18 PTY . . . D 3 5.406 -1.378 -23.796 1 100.93 ? C18 PTY 1424 A 1 HETATM 18 C C19 PTY . . . D 3 4.344 -2.081 -24.697 1 135.03 ? C19 PTY 1424 A 1 HETATM 19 C C20 PTY . . . D 3 3.59 -1.017 -25.545 1 128.33 ? C20 PTY 1424 A 1 HETATM 20 C C21 PTY . . . D 3 2.1 -1.444 -25.697 1 127.63 ? C21 PTY 1424 A 1 HETATM 21 C C22 PTY . . . D 3 1.998 -2.709 -26.587 1 147.29 ? C22 PTY 1424 A 1 HETATM 22 C C23 PTY . . . D 3 0.538 -3.201 -26.608 1 135.32 ? C23 PTY 1424 A 1 HETATM 23 C C24 PTY . . . D 3 -0.025 -3.164 -28.049 1 135.81 ? C24 PTY 1424 A 1 HETATM 24 C C25 PTY . . . D 3 -0.112 -1.722 -28.54 1 141.84 ? C25 PTY 1424 A 1 HETATM 25 C C26 PTY . . . D 3 -1.034 -0.919 -27.637 1 128.31 ? C26 PTY 1424 A 1 HETATM 26 C C27 PTY . . . D 3 -0.429 0.462 -27.387 1 140.25 ? C27 PTY 1424 A 1 HETATM 27 C C28 PTY . . . D 3 -0.204 1.178 -28.718 1 137.75 ? C28 PTY 1424 A 1 HETATM 28 C C29 PTY . . . D 3 1.093 1.973 -28.653 1 130.62 ? C29 PTY 1424 A 1 HETATM 29 C C30 PTY . . . D 3 11.707 -6.999 -33.933 1 165.43 ? C30 PTY 1424 A 1 HETATM 30 C C31 PTY . . . D 3 10.611 -6.198 -34.665 1 174.44 ? C31 PTY 1424 A 1 HETATM 31 O O30 PTY . . . D 3 12.297 -7.892 -34.51 1 150.58 ? O30 PTY 1424 A 1 HETATM 32 C C32 PTY . . . D 3 9.416 -7.125 -34.995 1 163.73 ? C32 PTY 1424 A 1 HETATM 33 C C33 PTY . . . D 3 8.438 -6.378 -35.906 1 149.78 ? C33 PTY 1424 A 1 HETATM 34 C C34 PTY . . . D 3 6.996 -6.875 -35.651 1 118.38 ? C34 PTY 1424 A 1 HETATM 35 C C35 PTY . . . D 3 6.497 -6.361 -34.293 1 125.82 ? C35 PTY 1424 A 1 HETATM 36 C C36 PTY . . . D 3 4.945 -6.357 -34.297 1 137.77 ? C36 PTY 1424 A 1 HETATM 37 C C37 PTY . . . D 3 4.413 -6.409 -32.847 1 134.75 ? C37 PTY 1424 A 1 HETATM 38 C C38 PTY . . . D 3 2.88 -6.642 -32.855 1 143.54 ? C38 PTY 1424 A 1 HETATM 39 C C39 PTY . . . D 3 2.455 -7.492 -31.592 1 141.72 ? C39 PTY 1424 A 1 HETATM 40 C C40 PTY . . . D 3 0.898 -7.526 -31.488 1 131.13 ? C40 PTY 1424 A 1 HETATM 41 C C41 PTY . . . D 3 0.444 -8.693 -30.558 1 112.26 ? C41 PTY 1424 A 1 HETATM 42 C C42 PTY . . . D 3 0.505 -8.241 -29.07 1 111.77 ? C42 PTY 1424 A 1 HETATM 43 C C43 PTY . . . D 3 -0.907 -8.053 -28.532 1 115.27 ? C43 PTY 1424 A 1 HETATM 44 C C44 PTY . . . D 3 -1.395 -6.634 -28.836 1 103.39 ? C44 PTY 1424 A 1 HETATM 45 P P1 PTY . . . D 3 15.38 -10.485 -29.662 1 200.14 ? P1 PTY 1424 A 1 HETATM 46 O O11 PTY . . . D 3 16.534 -11.09 -30.594 1 157.02 ? O11 PTY 1424 A 1 HETATM 47 O O12 PTY . . . D 3 14.354 -11.55 -29.335 1 187.08 ? O12 PTY 1424 A 1 HETATM 48 O O13 PTY . . . D 3 15.97 -9.955 -28.38 1 170.22 ? O13 PTY 1424 A 1 HETATM 49 O O14 PTY . . . D 3 14.643 -9.274 -30.452 1 157.7 ? O14 PTY 1424 A 1 HETATM 50 N N1 PTY . . . D 3 17.254 -14.258 -31.421 1 101.22 ? N1 PTY 1424 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 50 #