data_4CZC # _model_server_result.job_id 6PVpPpvE-PNZLW1ngvDEMg _model_server_result.datetime_utc '2024-10-19 11:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4czc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1337}' # _entry.id 4CZC # _exptl.entry_id 4CZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 884.576 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Fe(III) Uroporphyrin' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.06 _cell.angle_gamma 90 _cell.entry_id 4CZC _cell.length_a 103.75 _cell.length_b 72.6 _cell.length_c 51.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 122 A LEU 122 1_555 A N MSE 123 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 123 A MSE 123 1_555 A N ALA 124 A ALA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C ARG 198 A ARG 198 1_555 A N MSE 199 A MSE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C MSE 199 A MSE 199 1_555 A N SER 200 A SER 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ALA 235 A ALA 235 1_555 A N MSE 236 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 236 A MSE 236 1_555 A N SER 237 A SER 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 A C ALA 277 A ALA 277 1_555 A N MSE 278 A MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 278 A MSE 278 1_555 A N MSE 279 A MSE 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 279 A MSE 279 1_555 A N HIS 280 A HIS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A NE2 HIS 261 A HIS 261 1_555 B FE UFE . A UFE 1337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? # _chem_comp.formula 'C40 H36 Fe N4 O16' _chem_comp.formula_weight 884.576 _chem_comp.id UFE _chem_comp.mon_nstd_flag . _chem_comp.name 'Fe(III) Uroporphyrin' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2C CCC UFE doub 358 n n O1C CCC UFE sing 359 n n CCC CBC UFE sing 360 n n CBC CAC UFE sing 361 n n CAC C3C UFE sing 362 n n O3C CEC UFE doub 363 n n CDC CEC UFE sing 364 n n CDC C2C UFE sing 365 n n CEC O4C UFE sing 366 n n C3C C2C UFE doub 367 n y C3C C4C UFE sing 368 n y C2C C1C UFE sing 369 n y O2D CCD UFE doub 370 n n CCD O1D UFE sing 371 n n CCD CBD UFE sing 372 n n C4C CHD UFE doub 373 n n C4C NC UFE sing 374 n y C1C CHC UFE doub 375 n n C1C NC UFE sing 376 n y CHD C1D UFE sing 377 n n CBD CAD UFE sing 378 n n CHC C4B UFE sing 379 n n CBB CCB UFE sing 380 n n CBB CAB UFE sing 381 n n NC FE UFE sing 382 n n O1B CCB UFE doub 383 n n CAD C2D UFE sing 384 n n CCB O2B UFE sing 385 n n C1D C2D UFE sing 386 n n C1D ND UFE doub 387 n n CAB C3B UFE sing 388 n n C2D C3D UFE doub 389 n n C4B C3B UFE sing 390 n n C4B NB UFE doub 391 n n O3D CED UFE doub 392 n n C3B C2B UFE doub 393 n n ND FE UFE sing 394 n n ND C4D UFE sing 395 n n FE NB UFE sing 396 n n FE NA UFE sing 397 n n NB C1B UFE sing 398 n n C3D C4D UFE sing 399 n n C3D CDD UFE sing 400 n n CED O4D UFE sing 401 n n CED CDD UFE sing 402 n n C4D CHA UFE doub 403 n n C2B C1B UFE sing 404 n n C2B CDB UFE sing 405 n n C1B CHB UFE doub 406 n n NA C1A UFE sing 407 n y NA C4A UFE sing 408 n y CDB CEB UFE sing 409 n n CHA C1A UFE sing 410 n n CHB C4A UFE sing 411 n n C1A C2A UFE doub 412 n y C4A C3A UFE doub 413 n y CEB O4B UFE doub 414 n n CEB O3B UFE sing 415 n n C2A C3A UFE sing 416 n y C2A CDA UFE sing 417 n n C3A CAA UFE sing 418 n n O3A CEA UFE doub 419 n n CDA CEA UFE sing 420 n n CAA CBA UFE sing 421 n n CBA CCA UFE sing 422 n n CEA O4A UFE sing 423 n n O2A CCA UFE doub 424 n n CCA O1A UFE sing 425 n n O4D H1 UFE sing 426 n n CDD H2 UFE sing 427 n n CDD H3 UFE sing 428 n n CAD H4 UFE sing 429 n n CAD H5 UFE sing 430 n n CBD H6 UFE sing 431 n n CBD H7 UFE sing 432 n n O1D H8 UFE sing 433 n n CHD H9 UFE sing 434 n n CHA H10 UFE sing 435 n n CAA H11 UFE sing 436 n n CAA H12 UFE sing 437 n n CBA H13 UFE sing 438 n n CBA H14 UFE sing 439 n n O1A H15 UFE sing 440 n n CDA H16 UFE sing 441 n n CDA H17 UFE sing 442 n n O4A H18 UFE sing 443 n n CAB H19 UFE sing 444 n n CAB H20 UFE sing 445 n n CBB H21 UFE sing 446 n n CBB H22 UFE sing 447 n n O2B H23 UFE sing 448 n n CDB H24 UFE sing 449 n n CDB H25 UFE sing 450 n n O3B H26 UFE sing 451 n n CHB H27 UFE sing 452 n n CDC H28 UFE sing 453 n n CDC H29 UFE sing 454 n n O4C H30 UFE sing 455 n n CHC H31 UFE sing 456 n n CAC H32 UFE sing 457 n n CAC H33 UFE sing 458 n n CBC H34 UFE sing 459 n n CBC H35 UFE sing 460 n n O1C H36 UFE sing 461 n n # _atom_sites.entry_id 4CZC _atom_sites.fract_transf_matrix[1][1] 0.009639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002059 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UFE A 1 1337 1337 UFE UFE . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4D UFE . . . B 2 98.839 26.429 108.546 1 110.8 ? O4D UFE 1337 A 1 HETATM 2 C CED UFE . . . B 2 97.751 26.661 107.961 1 116.45 ? CED UFE 1337 A 1 HETATM 3 O O3D UFE . . . B 2 97.362 26.056 106.928 1 117.41 ? O3D UFE 1337 A 1 HETATM 4 C CDD UFE . . . B 2 96.883 27.725 108.579 1 115.05 ? CDD UFE 1337 A 1 HETATM 5 C C3D UFE . . . B 2 95.626 27.981 107.785 1 116.38 ? C3D UFE 1337 A 1 HETATM 6 C C2D UFE . . . B 2 95.54 28.372 106.362 1 116.2 ? C2D UFE 1337 A 1 HETATM 7 C CAD UFE . . . B 2 96.687 28.577 105.395 1 129.42 ? CAD UFE 1337 A 1 HETATM 8 C CBD UFE . . . B 2 96.897 30.076 105.122 1 132.07 ? CBD UFE 1337 A 1 HETATM 9 C CCD UFE . . . B 2 95.748 30.587 104.291 1 141.28 ? CCD UFE 1337 A 1 HETATM 10 O O2D UFE . . . B 2 95.458 29.9 103.289 1 147.55 ? O2D UFE 1337 A 1 HETATM 11 O O1D UFE . . . B 2 95.114 31.617 104.633 1 117.38 ? O1D UFE 1337 A 1 HETATM 12 C C1D UFE . . . B 2 94.072 28.498 106.155 1 101.26 ? C1D UFE 1337 A 1 HETATM 13 C CHD UFE . . . B 2 93.475 28.835 104.843 1 91.85 ? CHD UFE 1337 A 1 HETATM 14 C C4D UFE . . . B 2 94.204 27.919 108.224 1 107.69 ? C4D UFE 1337 A 1 HETATM 15 C CHA UFE . . . B 2 93.808 27.602 109.622 1 105.17 ? CHA UFE 1337 A 1 HETATM 16 N ND UFE . . . B 2 93.331 28.2 107.237 1 98.58 ? ND UFE 1337 A 1 HETATM 17 FE FE UFE . . . B 2 91.251 28.324 107.413 1 100.95 ? FE UFE 1337 A 1 HETATM 18 N NA UFE . . . B 2 91.428 28.207 109.491 1 103.66 ? NA UFE 1337 A 1 HETATM 19 C C4A UFE . . . B 2 90.483 28.498 110.383 1 100.83 ? C4A UFE 1337 A 1 HETATM 20 C C3A UFE . . . B 2 90.882 28.372 111.784 1 115.47 ? C3A UFE 1337 A 1 HETATM 21 C CAA UFE . . . B 2 90.031 28.596 112.978 1 118.44 ? CAA UFE 1337 A 1 HETATM 22 C CBA UFE . . . B 2 89.125 27.393 113.068 1 118.42 ? CBA UFE 1337 A 1 HETATM 23 C CCA UFE . . . B 2 88.138 27.702 114.173 1 121.68 ? CCA UFE 1337 A 1 HETATM 24 O O2A UFE . . . B 2 86.922 27.412 114.023 1 107.73 ? O2A UFE 1337 A 1 HETATM 25 O O1A UFE . . . B 2 88.574 28.25 115.217 1 113.72 ? O1A UFE 1337 A 1 HETATM 26 C C2A UFE . . . B 2 92.288 27.971 111.704 1 121.15 ? C2A UFE 1337 A 1 HETATM 27 C CDA UFE . . . B 2 93.22 27.661 112.844 1 130.15 ? CDA UFE 1337 A 1 HETATM 28 C CEA UFE . . . B 2 92.884 26.238 113.254 1 139.42 ? CEA UFE 1337 A 1 HETATM 29 O O4A UFE . . . B 2 91.966 26.068 114.102 1 147.5 ? O4A UFE 1337 A 1 HETATM 30 O O3A UFE . . . B 2 93.518 25.304 112.702 1 131.65 ? O3A UFE 1337 A 1 HETATM 31 C C1A UFE . . . B 2 92.506 27.899 110.23 1 110.98 ? C1A UFE 1337 A 1 HETATM 32 N NB UFE . . . B 2 89.175 28.519 107.613 1 90.08 ? NB UFE 1337 A 1 HETATM 33 C C4B UFE . . . B 2 88.255 28.531 106.647 1 109.16 ? C4B UFE 1337 A 1 HETATM 34 C C3B UFE . . . B 2 86.858 28.768 107.128 1 117.08 ? C3B UFE 1337 A 1 HETATM 35 C CAB UFE . . . B 2 85.589 28.82 106.314 1 121.2 ? CAB UFE 1337 A 1 HETATM 36 C CBB UFE . . . B 2 85.709 29.938 105.267 1 125.8 ? CBB UFE 1337 A 1 HETATM 37 C CCB UFE . . . B 2 85.47 31.331 105.819 1 128.88 ? CCB UFE 1337 A 1 HETATM 38 O O2B UFE . . . B 2 84.564 31.499 106.666 1 142.06 ? O2B UFE 1337 A 1 HETATM 39 O O1B UFE . . . B 2 86.179 32.278 105.388 1 98.9 ? O1B UFE 1337 A 1 HETATM 40 C C2B UFE . . . B 2 87 28.944 108.593 1 106.92 ? C2B UFE 1337 A 1 HETATM 41 C CDB UFE . . . B 2 85.893 29.211 109.618 1 95.64 ? CDB UFE 1337 A 1 HETATM 42 C CEB UFE . . . B 2 86.347 29.447 111.07 1 103.51 ? CEB UFE 1337 A 1 HETATM 43 O O4B UFE . . . B 2 86.01 30.514 111.654 1 88.95 ? O4B UFE 1337 A 1 HETATM 44 O O3B UFE . . . B 2 87.037 28.583 111.671 1 101.56 ? O3B UFE 1337 A 1 HETATM 45 C C1B UFE . . . B 2 88.482 28.793 108.743 1 95.05 ? C1B UFE 1337 A 1 HETATM 46 C CHB UFE . . . B 2 89.125 28.865 110.05 1 88.65 ? CHB UFE 1337 A 1 HETATM 47 N NC UFE . . . B 2 91.081 28.504 105.345 1 78.75 ? NC UFE 1337 A 1 HETATM 48 C C4C UFE . . . B 2 92.051 28.756 104.457 1 93.42 ? C4C UFE 1337 A 1 HETATM 49 C C3C UFE . . . B 2 91.571 28.868 103.055 1 101.47 ? C3C UFE 1337 A 1 HETATM 50 C C2C UFE . . . B 2 90.119 28.72 103.205 1 102.1 ? C2C UFE 1337 A 1 HETATM 51 C CDC UFE . . . B 2 88.979 28.677 102.229 1 117.03 ? CDC UFE 1337 A 1 HETATM 52 C CEC UFE . . . B 2 88.378 27.273 102.426 1 137.14 ? CEC UFE 1337 A 1 HETATM 53 O O4C UFE . . . B 2 87.342 27.113 103.129 1 131.13 ? O4C UFE 1337 A 1 HETATM 54 O O3C UFE . . . B 2 88.952 26.275 101.917 1 150.57 ? O3C UFE 1337 A 1 HETATM 55 C C1C UFE . . . B 2 89.958 28.496 104.648 1 96.63 ? C1C UFE 1337 A 1 HETATM 56 C CHC UFE . . . B 2 88.619 28.342 105.235 1 100.58 ? CHC UFE 1337 A 1 HETATM 57 C CAC UFE . . . B 2 92.342 29.13 101.798 1 112.81 ? CAC UFE 1337 A 1 HETATM 58 C CBC UFE . . . B 2 92.901 27.876 101.169 1 118.37 ? CBC UFE 1337 A 1 HETATM 59 C CCC UFE . . . B 2 93.243 28.234 99.727 1 129.9 ? CCC UFE 1337 A 1 HETATM 60 O O1C UFE . . . B 2 94.343 28.786 99.467 1 119.75 ? O1C UFE 1337 A 1 HETATM 61 O O2C UFE . . . B 2 92.404 27.984 98.826 1 127.91 ? O2C UFE 1337 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 61 #