data_4CZK # _model_server_result.job_id hY3Fd3iS56KAgEHU6HE_Bg _model_server_result.datetime_utc '2024-11-24 20:57:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4czk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1336}' # _entry.id 4CZK # _exptl.entry_id 4CZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CZK _cell.length_a 51.754 _cell.length_b 73.264 _cell.length_c 84.951 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 133 A GLU 140 1_555 B MG MG . A MG 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 B MG MG . A MG 1335 1_555 C O1G ANP . A ANP 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 B MG MG . A MG 1335 1_555 C O1B ANP . A ANP 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 B MG MG . A MG 1335 1_555 E O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 B MG MG . A MG 1335 1_555 E O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 B MG MG . A MG 1335 1_555 E O HOH . A HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4CZK _atom_sites.fract_transf_matrix[1][1] 0.019322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1335 1335 MG MG . C 3 ANP A 1 1336 1336 ANP ANP . D 4 F90 A 1 1337 1337 F90 F90 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -23.962 4.85 -10.164 1 13.03 ? PG ANP 1336 A 1 HETATM 2 O O1G ANP . . . C 3 -25.169 5.152 -9.337 1 13.47 ? O1G ANP 1336 A 1 HETATM 3 O O2G ANP . . . C 3 -24.024 5.687 -11.489 1 19.96 ? O2G ANP 1336 A 1 HETATM 4 O O3G ANP . . . C 3 -23.965 3.325 -10.548 1 14.45 ? O3G ANP 1336 A 1 HETATM 5 P PB ANP . . . C 3 -22.809 6.103 -7.941 1 7.46 ? PB ANP 1336 A 1 HETATM 6 O O1B ANP . . . C 3 -24.009 5.579 -7.191 1 10.65 ? O1B ANP 1336 A 1 HETATM 7 O O2B ANP . . . C 3 -21.517 5.97 -7.004 1 12.9 ? O2B ANP 1336 A 1 HETATM 8 N N3B ANP . . . C 3 -22.538 5.197 -9.326 1 13.09 ? N3B ANP 1336 A 1 HETATM 9 P PA ANP . . . C 3 -22.887 8.69 -7.183 1 8.04 ? PA ANP 1336 A 1 HETATM 10 O O1A ANP . . . C 3 -24.273 9.117 -6.74 1 9.97 ? O1A ANP 1336 A 1 HETATM 11 O O2A ANP . . . C 3 -22.131 8.137 -6.001 1 6.07 ? O2A ANP 1336 A 1 HETATM 12 O O3A ANP . . . C 3 -23.021 7.614 -8.3 1 7.64 ? O3A ANP 1336 A 1 HETATM 13 O O5' ANP . . . C 3 -22.122 9.92 -7.789 1 7.29 ? O5' ANP 1336 A 1 HETATM 14 C C5' ANP . . . C 3 -20.943 9.68 -8.462 1 8.6 ? C5' ANP 1336 A 1 HETATM 15 C C4' ANP . . . C 3 -20.641 10.869 -9.365 1 8.93 ? C4' ANP 1336 A 1 HETATM 16 O O4' ANP . . . C 3 -21.004 12.097 -8.797 1 4.62 ? O4' ANP 1336 A 1 HETATM 17 C C3' ANP . . . C 3 -19.187 10.936 -9.664 1 13.82 ? C3' ANP 1336 A 1 HETATM 18 O O3' ANP . . . C 3 -18.976 10.89 -11.043 1 7.06 ? O3' ANP 1336 A 1 HETATM 19 C C2' ANP . . . C 3 -18.734 12.212 -9.144 1 10.08 ? C2' ANP 1336 A 1 HETATM 20 O O2' ANP . . . C 3 -17.771 12.751 -9.961 1 18.81 ? O2' ANP 1336 A 1 HETATM 21 C C1' ANP . . . C 3 -19.996 12.991 -9.165 1 11.87 ? C1' ANP 1336 A 1 HETATM 22 N N9 ANP . . . C 3 -19.926 14.163 -8.304 1 10.3 ? N9 ANP 1336 A 1 HETATM 23 C C8 ANP . . . C 3 -19.716 14.18 -6.954 1 5.8 ? C8 ANP 1336 A 1 HETATM 24 N N7 ANP . . . C 3 -19.713 15.433 -6.516 1 5.26 ? N7 ANP 1336 A 1 HETATM 25 C C5 ANP . . . C 3 -19.917 16.273 -7.562 1 9.41 ? C5 ANP 1336 A 1 HETATM 26 C C6 ANP . . . C 3 -20.01 17.658 -7.71 1 9.4 ? C6 ANP 1336 A 1 HETATM 27 N N6 ANP . . . C 3 -19.878 18.508 -6.568 1 11.26 ? N6 ANP 1336 A 1 HETATM 28 N N1 ANP . . . C 3 -20.227 18.192 -8.927 1 13.01 ? N1 ANP 1336 A 1 HETATM 29 C C2 ANP . . . C 3 -20.36 17.412 -10.03 1 12.86 ? C2 ANP 1336 A 1 HETATM 30 N N3 ANP . . . C 3 -20.274 16.058 -9.923 1 9.86 ? N3 ANP 1336 A 1 HETATM 31 C C4 ANP . . . C 3 -20.057 15.472 -8.721 1 8.08 ? C4 ANP 1336 A 1 HETATM 32 H HOG2 ANP . . . C 3 -24.668 5.394 -11.985 1 23.95 ? HOG2 ANP 1336 A 1 HETATM 33 H HOG3 ANP . . . C 3 -24.699 3.14 -11.034 1 17.34 ? HOG3 ANP 1336 A 1 HETATM 34 H HOB2 ANP . . . C 3 -21.657 5.342 -6.394 1 15.48 ? HOB2 ANP 1336 A 1 HETATM 35 H HNB1 ANP . . . C 3 -22.141 4.405 -9.083 1 15.7 ? HNB1 ANP 1336 A 1 HETATM 36 H "H5'1" ANP . . . C 3 -21.04 8.871 -9.013 1 10.32 ? "H5'1" ANP 1336 A 1 HETATM 37 H "H5'2" ANP . . . C 3 -20.217 9.556 -7.822 1 10.32 ? "H5'2" ANP 1336 A 1 HETATM 38 H H4' ANP . . . C 3 -21.116 10.762 -10.198 1 10.71 ? H4' ANP 1336 A 1 HETATM 39 H H3' ANP . . . C 3 -18.715 10.212 -9.209 1 16.58 ? H3' ANP 1336 A 1 HETATM 40 H H2' ANP . . . C 3 -18.399 12.088 -8.24 1 12.09 ? H2' ANP 1336 A 1 HETATM 41 H HO2' ANP . . . C 3 -16.987 12.668 -9.581 1 22.57 ? HO2' ANP 1336 A 1 HETATM 42 H H1' ANP . . . C 3 -20.152 13.274 -10.094 1 14.24 ? H1' ANP 1336 A 1 HETATM 43 H H8 ANP . . . C 3 -19.588 13.389 -6.395 1 6.97 ? H8 ANP 1336 A 1 HETATM 44 H HN61 ANP . . . C 3 -19.939 19.408 -6.663 1 13.51 ? HN61 ANP 1336 A 1 HETATM 45 H HN62 ANP . . . C 3 -19.733 18.148 -5.749 1 13.51 ? HN62 ANP 1336 A 1 HETATM 46 H H2 ANP . . . C 3 -20.515 17.822 -10.897 1 15.43 ? H2 ANP 1336 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 46 #