data_4CZM # _model_server_result.job_id 37cacQGTmKalRmGIYl1oew _model_server_result.datetime_utc '2024-11-13 12:07:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4czm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1346}' # _entry.id 4CZM # _exptl.entry_id 4CZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CZM _cell.length_a 67.791 _cell.length_b 67.791 _cell.length_c 320.556 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 1345 1_555 D O1G ANP . A ANP 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 C MG MG . A MG 1345 1_555 D O2B ANP . A ANP 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 C MG MG . A MG 1345 1_555 G O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 C MG MG . A MG 1345 1_555 G O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc5 C MG MG . A MG 1345 1_555 G O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc6 C MG MG . A MG 1345 1_555 G O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc7 E MG MG . B MG 1345 1_555 F O2B ANP . B ANP 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 E MG MG . B MG 1345 1_555 F O1G ANP . B ANP 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc9 E MG MG . B MG 1345 1_555 H O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc10 E MG MG . B MG 1345 1_555 H O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc11 E MG MG . B MG 1345 1_555 H O HOH . B HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc12 E MG MG . B MG 1345 1_555 H O HOH . B HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4CZM _atom_sites.fract_transf_matrix[1][1] 0.014751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1345 1345 MG MG . D 3 ANP A 1 1346 1346 ANP ANP . E 2 MG B 1 1345 1345 MG MG . F 3 ANP B 1 1346 1346 ANP ANP . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 4.911 120.556 8.625 1 54.53 ? PG ANP 1346 B 1 HETATM 2 O O1G ANP . . . F 3 5.527 120.077 7.388 1 52.18 ? O1G ANP 1346 B 1 HETATM 3 O O2G ANP . . . F 3 6.017 121.269 9.444 1 57.58 ? O2G ANP 1346 B 1 HETATM 4 O O3G ANP . . . F 3 4.412 119.379 9.414 1 47.49 ? O3G ANP 1346 B 1 HETATM 5 P PB ANP . . . F 3 2.788 122.026 7.127 1 44.88 ? PB ANP 1346 B 1 HETATM 6 O O1B ANP . . . F 3 1.393 122.195 7.629 1 45.25 ? O1B ANP 1346 B 1 HETATM 7 O O2B ANP . . . F 3 2.969 120.762 6.217 1 47.84 ? O2B ANP 1346 B 1 HETATM 8 N N3B ANP . . . F 3 3.623 121.614 8.481 1 48.02 ? N3B ANP 1346 B 1 HETATM 9 P PA ANP . . . F 3 3.021 124.024 5.184 1 46.74 ? PA ANP 1346 B 1 HETATM 10 O O1A ANP . . . F 3 3.918 123.688 4.099 1 48.18 ? O1A ANP 1346 B 1 HETATM 11 O O2A ANP . . . F 3 1.509 124.116 4.949 1 43.08 ? O2A ANP 1346 B 1 HETATM 12 O O3A ANP . . . F 3 3.274 123.349 6.583 1 40.74 ? O3A ANP 1346 B 1 HETATM 13 O O5' ANP . . . F 3 3.414 125.439 5.412 1 44.88 ? O5' ANP 1346 B 1 HETATM 14 C C5' ANP . . . F 3 2.814 126.209 6.458 1 49.52 ? C5' ANP 1346 B 1 HETATM 15 C C4' ANP . . . F 3 3.625 127.434 6.739 1 47.68 ? C4' ANP 1346 B 1 HETATM 16 O O4' ANP . . . F 3 3.8 128.212 5.525 1 53.44 ? O4' ANP 1346 B 1 HETATM 17 C C3' ANP . . . F 3 3.015 128.379 7.786 1 51.04 ? C3' ANP 1346 B 1 HETATM 18 O O3' ANP . . . F 3 4.018 128.808 8.684 1 50.25 ? O3' ANP 1346 B 1 HETATM 19 C C2' ANP . . . F 3 2.678 129.607 6.971 1 53.27 ? C2' ANP 1346 B 1 HETATM 20 O O2' ANP . . . F 3 2.797 130.807 7.694 1 59.19 ? O2' ANP 1346 B 1 HETATM 21 C C1' ANP . . . F 3 3.785 129.547 5.922 1 45.59 ? C1' ANP 1346 B 1 HETATM 22 N N9 ANP . . . F 3 3.51 130.399 4.824 1 42.59 ? N9 ANP 1346 B 1 HETATM 23 C C8 ANP . . . F 3 2.376 130.471 4.06 1 45.89 ? C8 ANP 1346 B 1 HETATM 24 N N7 ANP . . . F 3 2.366 131.477 3.22 1 50.3 ? N7 ANP 1346 B 1 HETATM 25 C C5 ANP . . . F 3 3.551 132.136 3.486 1 43.21 ? C5 ANP 1346 B 1 HETATM 26 C C6 ANP . . . F 3 4.139 133.281 2.935 1 46.67 ? C6 ANP 1346 B 1 HETATM 27 N N6 ANP . . . F 3 3.575 134.004 1.969 1 48.77 ? N6 ANP 1346 B 1 HETATM 28 N N1 ANP . . . F 3 5.319 133.681 3.438 1 46.07 ? N1 ANP 1346 B 1 HETATM 29 C C2 ANP . . . F 3 5.872 132.98 4.424 1 42.73 ? C2 ANP 1346 B 1 HETATM 30 N N3 ANP . . . F 3 5.413 131.891 5.033 1 54.79 ? N3 ANP 1346 B 1 HETATM 31 C C4 ANP . . . F 3 4.231 131.53 4.523 1 54.16 ? C4 ANP 1346 B 1 HETATM 32 H HNB1 ANP . . . F 3 3.786 122.358 8.975 1 57.61 ? HNB1 ANP 1346 B 1 HETATM 33 H "H5'1" ANP . . . F 3 2.757 125.666 7.264 1 59.42 ? "H5'1" ANP 1346 B 1 HETATM 34 H "H5'2" ANP . . . F 3 1.911 126.475 6.185 1 59.42 ? "H5'2" ANP 1346 B 1 HETATM 35 H H4' ANP . . . F 3 4.521 127.181 7.04 1 57.21 ? H4' ANP 1346 B 1 HETATM 36 H H3' ANP . . . F 3 2.244 127.995 8.211 1 61.24 ? H3' ANP 1346 B 1 HETATM 37 H H2' ANP . . . F 3 1.819 129.516 6.541 1 63.91 ? H2' ANP 1346 B 1 HETATM 38 H HO2' ANP . . . F 3 2.009 131.026 8.038 1 71.02 ? HO2' ANP 1346 B 1 HETATM 39 H H1' ANP . . . F 3 4.626 129.783 6.343 1 54.7 ? H1' ANP 1346 B 1 HETATM 40 H H8 ANP . . . F 3 1.673 129.825 4.11 1 55.06 ? H8 ANP 1346 B 1 HETATM 41 H HN61 ANP . . . F 3 4.001 134.757 1.645 1 58.51 ? HN61 ANP 1346 B 1 HETATM 42 H HN62 ANP . . . F 3 2.765 133.755 1.626 1 58.51 ? HN62 ANP 1346 B 1 HETATM 43 H H2 ANP . . . F 3 6.721 133.318 4.753 1 51.27 ? H2 ANP 1346 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #