data_4D0E # _model_server_result.job_id a8lProKV-jhXZ8dL3vwdDg _model_server_result.datetime_utc '2024-12-26 18:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1532}' # _entry.id 4D0E # _exptl.entry_id 4D0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D0E _cell.length_a 28.44 _cell.length_b 28.44 _cell.length_c 282.39 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 FUC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B FUC 1 B 1 FUC A 1381 FUC 2 n B NAG 2 B 2 NAG A 1 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 416 1_555 A SG CYS 21 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 15 A CYS 423 1_555 A SG CYS 30 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 32 A CYS 440 1_555 A SG CYS 41 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 48 A CYS 456 1_555 A SG CYS 59 A CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 53 A CYS 461 1_555 A SG CYS 68 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 70 A CYS 478 1_555 A SG CYS 79 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 86 A CYS 494 1_555 A SG CYS 97 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 A SG CYS 91 A CYS 499 1_555 A SG CYS 106 A CYS 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 A SG CYS 108 A CYS 516 1_555 A SG CYS 117 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A OG1 THR 58 A THR 466 1_555 B C1 FUC . B FUC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B O3 FUC . B FUC 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A OD2 ASP 4 A ASP 412 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc2 A OD1 ASP 4 A ASP 412 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc3 A O VAL 5 A VAL 413 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 A OE1 GLU 7 A GLU 415 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 A OD1 ASN 23 A ASN 431 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 A O THR 24 A THR 432 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 A O SER 27 A SER 435 1_555 E CA CA . A CA 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 A OD1 ASP 44 A ASP 452 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc9 A O VAL 45 A VAL 453 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 A OE1 GLU 47 A GLU 455 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc11 A OD1 ASP 61 A ASP 469 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc12 A O GLN 62 A GLN 470 1_555 C CA CA . A CA 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 A OD1 ASN 82 A ASN 490 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 A O THR 83 A THR 491 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc15 A OE1 GLU 85 A GLU 493 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc16 A OD1 ASP 99 A ASP 507 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc17 A OD2 ASP 99 A ASP 507 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc18 A O LYS 100 A LYS 508 1_555 D CA CA . A CA 1532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc19 A OE2 GLU 103 A GLU 511 4_645 F CA CA . A CA 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc20 A OE2 GLU 103 A GLU 511 1_555 F CA CA . A CA 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc21 A OE1 GLU 103 A GLU 511 4_645 F CA CA . A CA 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc22 A OE1 GLU 103 A GLU 511 1_555 F CA CA . A CA 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc23 A NE2 HIS 115 A HIS 523 1_555 F CA CA . A CA 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc24 A NE2 HIS 115 A HIS 523 4_645 F CA CA . A CA 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc25 C CA CA . A CA 1531 1_555 G O HOH . A HOH 2060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc26 C CA CA . A CA 1531 1_555 G O HOH . A HOH 2066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc27 D CA CA . A CA 1532 1_555 G O HOH . A HOH 2095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc28 E CA CA . A CA 1533 1_555 G O HOH . A HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D0E _atom_sites.fract_transf_matrix[1][1] 0.035162 _atom_sites.fract_transf_matrix[1][2] 0.020301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.040601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1531 1531 CA CA . D 3 CA A 1 1532 1532 CA CA . E 3 CA A 1 1533 1533 CA CA . F 3 CA A 1 1535 1535 CA CA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . G 4 HOH A 93 2093 2093 HOH HOH . G 4 HOH A 94 2094 2094 HOH HOH . G 4 HOH A 95 2095 2095 HOH HOH . G 4 HOH A 96 2096 2096 HOH HOH . G 4 HOH A 97 2097 2097 HOH HOH . G 4 HOH A 98 2098 2098 HOH HOH . G 4 HOH A 99 2099 2099 HOH HOH . G 4 HOH A 100 2100 2100 HOH HOH . G 4 HOH A 101 2101 2101 HOH HOH . G 4 HOH A 102 2102 2102 HOH HOH . G 4 HOH A 103 2103 2103 HOH HOH . G 4 HOH A 104 2104 2104 HOH HOH . G 4 HOH A 105 2105 2105 HOH HOH . G 4 HOH A 106 2106 2106 HOH HOH . G 4 HOH A 107 2107 2107 HOH HOH . G 4 HOH A 108 2108 2108 HOH HOH . G 4 HOH A 109 2109 2109 HOH HOH . G 4 HOH A 110 2110 2110 HOH HOH . G 4 HOH A 111 2111 2111 HOH HOH . G 4 HOH A 112 2112 2112 HOH HOH . G 4 HOH A 113 2113 2113 HOH HOH . G 4 HOH A 114 2114 2114 HOH HOH . G 4 HOH A 115 2115 2115 HOH HOH . G 4 HOH A 116 2116 2116 HOH HOH . G 4 HOH A 117 2117 2117 HOH HOH . G 4 HOH A 118 2118 2118 HOH HOH . G 4 HOH A 119 2119 2119 HOH HOH . G 4 HOH A 120 2120 2120 HOH HOH . G 4 HOH A 121 2121 2121 HOH HOH . G 4 HOH A 122 2122 2122 HOH HOH . G 4 HOH A 123 2123 2123 HOH HOH . G 4 HOH A 124 2124 2124 HOH HOH . G 4 HOH A 125 2125 2125 HOH HOH . G 4 HOH A 126 2126 2126 HOH HOH . G 4 HOH A 127 2127 2127 HOH HOH . G 4 HOH A 128 2128 2128 HOH HOH . G 4 HOH A 129 2129 2129 HOH HOH . G 4 HOH A 130 2130 2130 HOH HOH . G 4 HOH A 131 2131 2131 HOH HOH . G 4 HOH A 132 2132 2132 HOH HOH . G 4 HOH A 133 2133 2133 HOH HOH . G 4 HOH A 134 2134 2134 HOH HOH . G 4 HOH A 135 2135 2135 HOH HOH . G 4 HOH A 136 2136 2136 HOH HOH . G 4 HOH A 137 2137 2137 HOH HOH . G 4 HOH A 138 2138 2138 HOH HOH . G 4 HOH A 139 2139 2139 HOH HOH . G 4 HOH A 140 2140 2140 HOH HOH . G 4 HOH A 141 2141 2141 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 15.974 _atom_site.Cartn_y -4.82 _atom_site.Cartn_z 7.218 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1532 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #