data_4D0M # _model_server_result.job_id SXZyy9PGnHJklagaiBNwrw _model_server_result.datetime_utc '2024-11-22 16:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HB","auth_seq_id":2001}' # _entry.id 4D0M # _exptl.entry_id 4D0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.33 _cell.angle_gamma 90 _cell.entry_id 4D0M _cell.length_a 199.504 _cell.length_b 134.465 _cell.length_c 294.328 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 PISA dodecameric 12 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,O,P,S,T,U,V,KA,LA,MA,NA,OA,PA,ZA,AB,BB,FB,GB,HB 1 1 G,H,I,J,K,L,M,N,Q,R,EA,FA,QA,RA,SA,TA,UA,VA,WA,XA,YA,CB,DB,EB 2 1 W,X,Y,Z,AA,BA,CA,DA,GA,HA,IA,JA,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 MA N N ? 6 PA N N ? 6 SA N N ? 6 VA N N ? 6 YA N N ? 6 BB N N ? 6 EB N N ? 6 HB N N ? 6 KB N N ? 6 NB N N ? 6 QB N N ? 6 TB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 28 B SER 25 1_555 MA MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc2 LA O3G GSP . B GSP 2000 1_555 MA MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? metalc ? metalc3 LA O2B GSP . B GSP 2000 1_555 MA MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 OA O3G GSP . D GSP 2000 1_555 PA MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc5 OA O2B GSP . D GSP 2000 1_555 PA MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 H OG1 THR 46 H THR 43 1_555 SA MG MG . H MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc7 RA O3G GSP . H GSP 2000 1_555 SA MG MG . H MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.728 ? metalc ? metalc8 RA O2B GSP . H GSP 2000 1_555 SA MG MG . H MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc9 UA O3G GSP . J GSP 2000 1_555 VA MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc10 UA O2B GSP . J GSP 2000 1_555 VA MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc11 XA O3G GSP . N GSP 2000 1_555 YA MG MG . N MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc12 XA O2B GSP . N GSP 2000 1_555 YA MG MG . N MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc13 AB O3G GSP . P GSP 2000 1_555 BB MG MG . P MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc14 AB O2B GSP . P GSP 2000 1_555 BB MG MG . P MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 DB O3G GSP . R GSP 2000 1_555 EB MG MG . R MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc16 DB O2B GSP . R GSP 2000 1_555 EB MG MG . R MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc17 T OG1 THR 46 T THR 43 1_555 HB MG MG . T MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc18 GB O3G GSP . T GSP 2000 1_555 HB MG MG . T MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc19 GB O2B GSP . T GSP 2000 1_555 HB MG MG . T MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc20 JB O3G GSP . X GSP 2000 1_555 KB MG MG . X MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc21 JB O2B GSP . X GSP 2000 1_555 KB MG MG . X MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc22 MB O3G GSP . Z GSP 2000 1_555 NB MG MG . Z MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc23 MB O2B GSP . Z GSP 2000 1_555 NB MG MG . Z MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc24 PB O3G GSP . d GSP 2000 1_555 QB MG MG . d MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc25 PB O2B GSP . d GSP 2000 1_555 QB MG MG . d MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc26 SB O3G GSP . h GSP 2000 1_555 TB MG MG . h MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc27 SB O2B GSP . h GSP 2000 1_555 TB MG MG . h MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D0M _atom_sites.fract_transf_matrix[1][1] 0.005012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000029 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 4 093 A 1 2002 2002 093 093 . LA 5 GSP B 1 2000 2000 GSP GSP . MA 6 MG B 1 2001 2001 MG MG . NA 4 093 C 1 2002 2002 093 093 . OA 5 GSP D 1 2000 2000 GSP GSP . PA 6 MG D 1 2001 2001 MG MG . QA 4 093 G 1 2002 2002 093 093 . RA 5 GSP H 1 2000 2000 GSP GSP . SA 6 MG H 1 2001 2001 MG MG . TA 4 093 I 1 2002 2002 093 093 . UA 5 GSP J 1 2000 2000 GSP GSP . VA 6 MG J 1 2001 2001 MG MG . WA 4 093 M 1 2002 2002 093 093 . XA 5 GSP N 1 2000 2000 GSP GSP . YA 6 MG N 1 2001 2001 MG MG . ZA 4 093 O 1 2002 2002 093 093 . AB 5 GSP P 1 2000 2000 GSP GSP . BB 6 MG P 1 2001 2001 MG MG . CB 4 093 Q 1 2002 2002 093 093 . DB 5 GSP R 1 2000 2000 GSP GSP . EB 6 MG R 1 2001 2001 MG MG . FB 4 093 S 1 2002 2002 093 093 . GB 5 GSP T 1 2000 2000 GSP GSP . HB 6 MG T 1 2001 2001 MG MG . IB 4 093 W 1 2002 2002 093 093 . JB 5 GSP X 1 2000 2000 GSP GSP . KB 6 MG X 1 2001 2001 MG MG . LB 4 093 Y 1 2002 2002 093 093 . MB 5 GSP Z 1 2000 2000 GSP GSP . NB 6 MG Z 1 2001 2001 MG MG . OB 4 093 c 1 2002 2002 093 093 . PB 5 GSP d 1 2000 2000 GSP GSP . QB 6 MG d 1 2001 2001 MG MG . RB 4 093 g 1 2002 2002 093 093 . SB 5 GSP h 1 2000 2000 GSP GSP . TB 6 MG h 1 2001 2001 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id HB _atom_site.label_entity_id 6 _atom_site.Cartn_x 50.18 _atom_site.Cartn_y 250.967 _atom_site.Cartn_z 112.634 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 127.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id T _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #