data_4D0R # _model_server_result.job_id xFr4M-Gvqvnf0f1HYxCoEw _model_server_result.datetime_utc '2024-11-22 11:58:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1270}' # _entry.id 4D0R # _exptl.entry_id 4D0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D0R _cell.length_a 96.997 _cell.length_b 96.997 _cell.length_c 139.137 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 46.379 3 'crystal symmetry operation' 4_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 145.4955 84.001866 0 4 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 145.4955 84.001866 46.379 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 275 n n PA O2A NAD sing 276 n n PA O5B NAD sing 277 n n PA O3 NAD sing 278 n n O2A HOA2 NAD sing 279 n n O5B C5B NAD sing 280 n n C5B C4B NAD sing 281 n n C5B H51A NAD sing 282 n n C5B H52A NAD sing 283 n n C4B O4B NAD sing 284 n n C4B C3B NAD sing 285 n n C4B H4B NAD sing 286 n n O4B C1B NAD sing 287 n n C3B O3B NAD sing 288 n n C3B C2B NAD sing 289 n n C3B H3B NAD sing 290 n n O3B HO3A NAD sing 291 n n C2B O2B NAD sing 292 n n C2B C1B NAD sing 293 n n C2B H2B NAD sing 294 n n O2B HO2A NAD sing 295 n n C1B N9A NAD sing 296 n n C1B H1B NAD sing 297 n n N9A C8A NAD sing 298 n y N9A C4A NAD sing 299 n y C8A N7A NAD doub 300 n y C8A H8A NAD sing 301 n n N7A C5A NAD sing 302 n y C5A C6A NAD sing 303 n y C5A C4A NAD doub 304 n y C6A N6A NAD sing 305 n n C6A N1A NAD doub 306 n y N6A H61A NAD sing 307 n n N6A H62A NAD sing 308 n n N1A C2A NAD sing 309 n y C2A N3A NAD doub 310 n y C2A H2A NAD sing 311 n n N3A C4A NAD sing 312 n y O3 PN NAD sing 313 n n PN O1N NAD doub 314 n n PN O2N NAD sing 315 n n PN O5D NAD sing 316 n n O5D C5D NAD sing 317 n n C5D C4D NAD sing 318 n n C5D H51N NAD sing 319 n n C5D H52N NAD sing 320 n n C4D O4D NAD sing 321 n n C4D C3D NAD sing 322 n n C4D H4D NAD sing 323 n n O4D C1D NAD sing 324 n n C3D O3D NAD sing 325 n n C3D C2D NAD sing 326 n n C3D H3D NAD sing 327 n n O3D HO3N NAD sing 328 n n C2D O2D NAD sing 329 n n C2D C1D NAD sing 330 n n C2D H2D NAD sing 331 n n O2D HO2N NAD sing 332 n n C1D N1N NAD sing 333 n n C1D H1D NAD sing 334 n n N1N C2N NAD sing 335 n y N1N C6N NAD doub 336 n y C2N C3N NAD doub 337 n y C2N H2N NAD sing 338 n n C3N C7N NAD sing 339 n n C3N C4N NAD sing 340 n y C7N O7N NAD doub 341 n n C7N N7N NAD sing 342 n n N7N H71N NAD sing 343 n n N7N H72N NAD sing 344 n n C4N C5N NAD doub 345 n y C4N H4N NAD sing 346 n n C5N C6N NAD sing 347 n y C5N H5N NAD sing 348 n n C6N H6N NAD sing 349 n n # _atom_sites.entry_id 4D0R _atom_sites.fract_transf_matrix[1][1] 0.01031 _atom_sites.fract_transf_matrix[1][2] 0.005952 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 1270 1270 NAD NAD . C 3 41I A 1 1271 1271 41I 41I . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 48.973 51.036 11.223 1 47.01 ? PA NAD 1270 A 1 HETATM 2 O O1A NAD . . . B 2 47.841 50.246 10.689 1 48.2 ? O1A NAD 1270 A 1 HETATM 3 O O2A NAD . . . B 2 49.051 52.4 10.519 1 43.34 ? O2A NAD 1270 A 1 HETATM 4 O O5B NAD . . . B 2 48.863 51.245 12.864 1 50.28 ? O5B NAD 1270 A 1 HETATM 5 C C5B NAD . . . B 2 49.266 52.445 13.56 1 50.24 ? C5B NAD 1270 A 1 HETATM 6 C C4B NAD . . . B 2 48.126 52.849 14.461 1 51.29 ? C4B NAD 1270 A 1 HETATM 7 O O4B NAD . . . B 2 48.539 53.92 15.337 1 52.41 ? O4B NAD 1270 A 1 HETATM 8 C C3B NAD . . . B 2 46.856 53.33 13.748 1 50.77 ? C3B NAD 1270 A 1 HETATM 9 O O3B NAD . . . B 2 45.738 52.528 14.104 1 49.23 ? O3B NAD 1270 A 1 HETATM 10 C C2B NAD . . . B 2 46.688 54.772 14.236 1 51.66 ? C2B NAD 1270 A 1 HETATM 11 O O2B NAD . . . B 2 45.321 55.152 14.36 1 53.68 ? O2B NAD 1270 A 1 HETATM 12 C C1B NAD . . . B 2 47.394 54.697 15.582 1 51.75 ? C1B NAD 1270 A 1 HETATM 13 N N9A NAD . . . B 2 47.776 55.978 16.17 1 50.84 ? N9A NAD 1270 A 1 HETATM 14 C C8A NAD . . . B 2 48.54 56.968 15.611 1 51.01 ? C8A NAD 1270 A 1 HETATM 15 N N7A NAD . . . B 2 48.564 58.08 16.307 1 51.45 ? N7A NAD 1270 A 1 HETATM 16 C C5A NAD . . . B 2 47.771 57.797 17.408 1 49.87 ? C5A NAD 1270 A 1 HETATM 17 C C6A NAD . . . B 2 47.367 58.572 18.514 1 48.97 ? C6A NAD 1270 A 1 HETATM 18 N N6A NAD . . . B 2 47.707 59.853 18.689 1 48.35 ? N6A NAD 1270 A 1 HETATM 19 N N1A NAD . . . B 2 46.571 57.982 19.437 1 50.44 ? N1A NAD 1270 A 1 HETATM 20 C C2A NAD . . . B 2 46.214 56.704 19.262 1 49.82 ? C2A NAD 1270 A 1 HETATM 21 N N3A NAD . . . B 2 46.519 55.882 18.255 1 49.95 ? N3A NAD 1270 A 1 HETATM 22 C C4A NAD . . . B 2 47.296 56.496 17.349 1 50.28 ? C4A NAD 1270 A 1 HETATM 23 O O3 NAD . . . B 2 50.329 50.227 11.005 1 47.6 ? O3 NAD 1270 A 1 HETATM 24 P PN NAD . . . B 2 50.92 48.897 11.676 1 47.76 ? PN NAD 1270 A 1 HETATM 25 O O1N NAD . . . B 2 49.825 47.942 11.966 1 47.39 ? O1N NAD 1270 A 1 HETATM 26 O O2N NAD . . . B 2 52.066 48.434 10.867 1 51.36 ? O2N NAD 1270 A 1 HETATM 27 O O5D NAD . . . B 2 51.549 49.506 13.004 1 46.96 ? O5D NAD 1270 A 1 HETATM 28 C C5D NAD . . . B 2 51.102 49.093 14.31 1 48.61 ? C5D NAD 1270 A 1 HETATM 29 C C4D NAD . . . B 2 52.295 48.953 15.221 1 49.81 ? C4D NAD 1270 A 1 HETATM 30 O O4D NAD . . . B 2 53.156 47.887 14.748 1 50.8 ? O4D NAD 1270 A 1 HETATM 31 C C3D NAD . . . B 2 53.184 50.192 15.36 1 49.63 ? C3D NAD 1270 A 1 HETATM 32 O O3D NAD . . . B 2 53.577 50.317 16.723 1 50.35 ? O3D NAD 1270 A 1 HETATM 33 C C2D NAD . . . B 2 54.36 49.853 14.44 1 49.51 ? C2D NAD 1270 A 1 HETATM 34 O O2D NAD . . . B 2 55.543 50.599 14.685 1 50.69 ? O2D NAD 1270 A 1 HETATM 35 C C1D NAD . . . B 2 54.47 48.36 14.716 1 48.47 ? C1D NAD 1270 A 1 HETATM 36 N N1N NAD . . . B 2 55.283 47.519 13.742 1 44.52 ? N1N NAD 1270 A 1 HETATM 37 C C2N NAD . . . B 2 55.083 47.672 12.405 1 43.91 ? C2N NAD 1270 A 1 HETATM 38 C C3N NAD . . . B 2 55.767 46.879 11.495 1 43.5 ? C3N NAD 1270 A 1 HETATM 39 C C7N NAD . . . B 2 55.442 46.904 10.027 1 44.26 ? C7N NAD 1270 A 1 HETATM 40 O O7N NAD . . . B 2 56.155 46.283 9.236 1 46.9 ? O7N NAD 1270 A 1 HETATM 41 N N7N NAD . . . B 2 54.415 47.636 9.632 1 43.66 ? N7N NAD 1270 A 1 HETATM 42 C C4N NAD . . . B 2 56.684 45.953 11.979 1 42.56 ? C4N NAD 1270 A 1 HETATM 43 C C5N NAD . . . B 2 56.875 45.816 13.341 1 44.25 ? C5N NAD 1270 A 1 HETATM 44 C C6N NAD . . . B 2 56.157 46.61 14.212 1 43.79 ? C6N NAD 1270 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #