data_4D1C # _model_server_result.job_id 5YXiiftUfgbCw9CMu-VvHg _model_server_result.datetime_utc '2025-03-06 12:50:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1467}' # _entry.id 4D1C # _exptl.entry_id 4D1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.079 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5Z)-5-[(3-bromophenyl)methylidene]imidazolidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D1C _cell.length_a 90.012 _cell.length_b 107.323 _cell.length_c 109.255 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 38 A ALA 38 1_555 C NA NA . A NA 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A O ILE 41 A ILE 41 1_555 C NA NA . A NA 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 A O ALA 309 A ALA 309 1_555 C NA NA . A NA 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A OG SER 312 A SER 312 1_555 C NA NA . A NA 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc5 A OG1 THR 313 A THR 313 1_555 C NA NA . A NA 1471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C10 H7 Br N2 O2' _chem_comp.formula_weight 267.079 _chem_comp.id B5H _chem_comp.mon_nstd_flag . _chem_comp.name (5Z)-5-[(3-bromophenyl)methylidene]imidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 CA B5H sing 70 n n N10 C2 B5H sing 71 n n CA CB B5H doub 72 z n CA C B5H sing 73 n n CB CG B5H sing 74 n n CG CD1 B5H sing 75 n y CG CD2 B5H doub 76 n y CD1 CE1 B5H doub 77 n y CE1 CZ B5H sing 78 n y CZ CE2 B5H doub 79 n y CE2 CD2 B5H sing 80 n y CE2 BR1 B5H sing 81 n n C N11 B5H sing 82 n n C O3 B5H doub 83 n n N11 C2 B5H sing 84 n n C2 O2 B5H doub 85 n n N10 H10 B5H sing 86 n n CB HB B5H sing 87 n n CD1 HD1 B5H sing 88 n n CD2 HD2 B5H sing 89 n n CE1 HE1 B5H sing 90 n n CZ HZ B5H sing 91 n n N11 H11 B5H sing 92 n n # _atom_sites.entry_id 4D1C _atom_sites.fract_transf_matrix[1][1] 0.01111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B5H A 1 1467 1467 B5H B5H . C 3 NA A 1 1471 1471 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 B5H . . . B 2 4.233 12.167 -24.678 1 154.04 ? N10 B5H 1467 A 1 HETATM 2 C CA B5H . . . B 2 3.193 11.74 -25.437 1 153.1 ? CA B5H 1467 A 1 HETATM 3 C CB B5H . . . B 2 2.474 10.58 -25.32 1 154.07 ? CB B5H 1467 A 1 HETATM 4 C CG B5H . . . B 2 2.493 9.712 -24.105 1 156.7 ? CG B5H 1467 A 1 HETATM 5 C CD1 B5H . . . B 2 2.767 10.223 -22.841 1 158.05 ? CD1 B5H 1467 A 1 HETATM 6 C CE1 B5H . . . B 2 2.776 9.401 -21.724 1 161.84 ? CE1 B5H 1467 A 1 HETATM 7 C CZ B5H . . . B 2 2.507 8.052 -21.848 1 164.49 ? CZ B5H 1467 A 1 HETATM 8 C CE2 B5H . . . B 2 2.228 7.531 -23.099 1 162.5 ? CE2 B5H 1467 A 1 HETATM 9 C CD2 B5H . . . B 2 2.22 8.353 -24.215 1 158.64 ? CD2 B5H 1467 A 1 HETATM 10 C C B5H . . . B 2 3.028 12.78 -26.389 1 152.15 ? C B5H 1467 A 1 HETATM 11 N N11 B5H . . . B 2 3.984 13.681 -26.068 1 152.89 ? N11 B5H 1467 A 1 HETATM 12 C C2 B5H . . . B 2 4.733 13.339 -25.033 1 154.08 ? C2 B5H 1467 A 1 HETATM 13 BR BR1 B5H . . . B 2 1.847 5.64 -23.294 1 165.92 ? BR1 B5H 1467 A 1 HETATM 14 O O2 B5H . . . B 2 5.66 13.954 -24.528 1 155.81 ? O2 B5H 1467 A 1 HETATM 15 O O3 B5H . . . B 2 2.212 12.857 -27.295 1 151.76 ? O3 B5H 1467 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #