data_4D1L # _model_server_result.job_id GtMwzC7L8FQgYUK0BfPANA _model_server_result.datetime_utc '2025-03-04 08:37:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1342}' # _entry.id 4D1L # _exptl.entry_id 4D1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D1L _cell.length_a 87.853 _cell.length_b 120.611 _cell.length_c 61.029 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,F,H,K,L,M,N 1 1 A,B,G,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 30.5145 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 15 A GLU 313 1_555 G ZN ZN . A ZN 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc2 A OE2 GLU 15 A GLU 313 1_555 G ZN ZN . A ZN 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc3 G ZN ZN . A ZN 1342 1_555 B OD1 ASP 31 B ASP 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 G ZN ZN . A ZN 1342 1_555 C OE2 GLU 39 C GLU 337 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 B OE2 GLU 39 B GLU 337 8_445 H ZN ZN . C ZN 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 C OD1 ASP 31 C ASP 329 1_555 H ZN ZN . C ZN 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 H ZN ZN . C ZN 1342 1_555 D OE1 GLU 15 D GLU 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 H ZN ZN . C ZN 1342 1_555 D OE2 GLU 15 D GLU 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D1L _atom_sites.fract_transf_matrix[1][1] 0.011383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ZN A 1 1342 1342 ZN ZN . H 2 ZN C 1 1342 1342 ZN ZN . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . I 3 HOH A 3 2003 2003 HOH HOH . I 3 HOH A 4 2004 2004 HOH HOH . I 3 HOH A 5 2005 2005 HOH HOH . I 3 HOH A 6 2006 2006 HOH HOH . I 3 HOH A 7 2007 2007 HOH HOH . I 3 HOH A 8 2008 2008 HOH HOH . I 3 HOH A 9 2009 2009 HOH HOH . I 3 HOH A 10 2010 2010 HOH HOH . I 3 HOH A 11 2011 2011 HOH HOH . I 3 HOH A 12 2012 2012 HOH HOH . I 3 HOH A 13 2013 2013 HOH HOH . I 3 HOH A 14 2014 2014 HOH HOH . I 3 HOH A 15 2015 2015 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . J 3 HOH B 2 2002 2002 HOH HOH . J 3 HOH B 3 2003 2003 HOH HOH . J 3 HOH B 4 2004 2004 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . K 3 HOH C 3 2003 2003 HOH HOH . K 3 HOH C 4 2004 2004 HOH HOH . K 3 HOH C 5 2005 2005 HOH HOH . K 3 HOH C 6 2006 2006 HOH HOH . K 3 HOH C 7 2007 2007 HOH HOH . K 3 HOH C 8 2008 2008 HOH HOH . K 3 HOH C 9 2009 2009 HOH HOH . K 3 HOH C 10 2010 2010 HOH HOH . K 3 HOH C 11 2011 2011 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . L 3 HOH D 3 2003 2003 HOH HOH . L 3 HOH D 4 2004 2004 HOH HOH . L 3 HOH D 5 2005 2005 HOH HOH . L 3 HOH D 6 2006 2006 HOH HOH . L 3 HOH D 7 2007 2007 HOH HOH . L 3 HOH D 8 2008 2008 HOH HOH . L 3 HOH D 9 2009 2009 HOH HOH . L 3 HOH D 10 2010 2010 HOH HOH . L 3 HOH D 11 2011 2011 HOH HOH . L 3 HOH D 12 2012 2012 HOH HOH . L 3 HOH D 13 2013 2013 HOH HOH . L 3 HOH D 14 2014 2014 HOH HOH . L 3 HOH D 15 2015 2015 HOH HOH . L 3 HOH D 16 2016 2016 HOH HOH . M 3 HOH E 1 2001 2001 HOH HOH . M 3 HOH E 2 2002 2002 HOH HOH . M 3 HOH E 3 2003 2003 HOH HOH . M 3 HOH E 4 2004 2004 HOH HOH . M 3 HOH E 5 2005 2005 HOH HOH . M 3 HOH E 6 2006 2006 HOH HOH . N 3 HOH F 1 2001 2001 HOH HOH . N 3 HOH F 2 2002 2002 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.951 _atom_site.Cartn_y -25.333 _atom_site.Cartn_z -10.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1342 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #