data_4D1M
#
_model_server_result.job_id            yIanM63gWGRU4B9Lu-I5qw 
_model_server_result.datetime_utc      '2025-03-04 08:19:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1343}' 
#
_entry.id    4D1M 
#
_exptl.entry_id    4D1M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.79 
_cell.angle_gamma         90 
_cell.entry_id            4D1M 
_cell.length_a            70.861 
_cell.length_b            74.507 
_cell.length_c            74.945 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
E,F,G,H,N,S,T,U,V 1 1 
A,B,C,D,M,O,P,Q,R 2 1 
I,J,K,L,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 5 B GLU 303 1_555 M ZN ZN . B ZN 1343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc2 M ZN ZN . B ZN 1343 1_555 L OE2 GLU 5 L GLU 303 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc3 F OD1 ASP 37 F ASP 335 1_555 N ZN ZN . F ZN 1344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4D1M 
_atom_sites.fract_transf_matrix[1][1]    0.014112 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007437 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013422 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 ZN B 1 1343 1343 ZN ZN . 
N 2 ZN F 1 1344 1344 ZN ZN . 
O 3 HOH A 1 2001 2001 HOH HOH . 
O 3 HOH A 2 2002 2002 HOH HOH . 
O 3 HOH A 3 2003 2003 HOH HOH . 
O 3 HOH A 4 2004 2004 HOH HOH . 
O 3 HOH A 5 2005 2005 HOH HOH . 
O 3 HOH A 6 2006 2006 HOH HOH . 
O 3 HOH A 7 2007 2007 HOH HOH . 
O 3 HOH A 8 2008 2008 HOH HOH . 
O 3 HOH A 9 2009 2009 HOH HOH . 
O 3 HOH A 10 2010 2010 HOH HOH . 
O 3 HOH A 11 2011 2011 HOH HOH . 
O 3 HOH A 12 2012 2012 HOH HOH . 
P 3 HOH B 1 2001 2001 HOH HOH . 
P 3 HOH B 2 2002 2002 HOH HOH . 
P 3 HOH B 3 2003 2003 HOH HOH . 
Q 3 HOH C 1 2001 2001 HOH HOH . 
Q 3 HOH C 2 2002 2002 HOH HOH . 
Q 3 HOH C 3 2003 2003 HOH HOH . 
Q 3 HOH C 4 2004 2004 HOH HOH . 
Q 3 HOH C 5 2005 2005 HOH HOH . 
R 3 HOH D 1 2001 2001 HOH HOH . 
R 3 HOH D 2 2002 2002 HOH HOH . 
S 3 HOH E 1 2001 2001 HOH HOH . 
S 3 HOH E 2 2002 2002 HOH HOH . 
S 3 HOH E 3 2003 2003 HOH HOH . 
S 3 HOH E 4 2004 2004 HOH HOH . 
S 3 HOH E 5 2005 2005 HOH HOH . 
S 3 HOH E 6 2006 2006 HOH HOH . 
S 3 HOH E 7 2007 2007 HOH HOH . 
S 3 HOH E 8 2008 2008 HOH HOH . 
S 3 HOH E 9 2009 2009 HOH HOH . 
S 3 HOH E 10 2010 2010 HOH HOH . 
S 3 HOH E 11 2011 2011 HOH HOH . 
T 3 HOH F 1 2001 2001 HOH HOH . 
T 3 HOH F 2 2002 2002 HOH HOH . 
T 3 HOH F 3 2003 2003 HOH HOH . 
U 3 HOH G 1 2001 2001 HOH HOH . 
U 3 HOH G 2 2002 2002 HOH HOH . 
U 3 HOH G 3 2003 2003 HOH HOH . 
U 3 HOH G 4 2004 2004 HOH HOH . 
U 3 HOH G 5 2005 2005 HOH HOH . 
V 3 HOH H 1 2001 2001 HOH HOH . 
V 3 HOH H 2 2002 2002 HOH HOH . 
V 3 HOH H 3 2003 2003 HOH HOH . 
V 3 HOH H 4 2004 2004 HOH HOH . 
W 3 HOH I 1 2001 2001 HOH HOH . 
W 3 HOH I 2 2002 2002 HOH HOH . 
W 3 HOH I 3 2003 2003 HOH HOH . 
W 3 HOH I 4 2004 2004 HOH HOH . 
W 3 HOH I 5 2005 2005 HOH HOH . 
W 3 HOH I 6 2006 2006 HOH HOH . 
X 3 HOH J 1 2001 2001 HOH HOH . 
Y 3 HOH K 1 2001 2001 HOH HOH . 
Y 3 HOH K 2 2002 2002 HOH HOH . 
Y 3 HOH K 3 2003 2003 HOH HOH . 
Y 3 HOH K 4 2004 2004 HOH HOH . 
Z 3 HOH L 1 2001 2001 HOH HOH . 
Z 3 HOH L 2 2002 2002 HOH HOH . 
Z 3 HOH L 3 2003 2003 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               17.973 
_atom_site.Cartn_y               48.685 
_atom_site.Cartn_z               -30.945 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        87.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1343 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#