data_4D2C
#
_model_server_result.job_id            So0yqJgIbgjHX1utGFfahA 
_model_server_result.datetime_utc      '2025-02-17 11:22:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    4D2C 
#
_exptl.entry_id    4D2C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D2C 
_cell.length_a            102.06 
_cell.length_b            110.33 
_cell.length_c            110.74 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     4D2C 
_atom_sites.fract_transf_matrix[1][1]    0.009798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 78M A 1 501 1473 78M 78M . 
C 2 78M A 1 502 1474 78M 78M . 
D 3 78N A 1 503 1475 78N 78N . 
E 2 78M A 1 504 1476 78M 78M . 
F 2 78M A 1 505 1477 78M 78M . 
G 3 78N A 1 506 1478 78N 78N . 
H 4 PO4 A 1 507 1479 PO4 PO4 . 
I 5 ALA A 1 508 32 ALA ALA . 
J 6 PHE A 1 509 33 PHE PHE . 
K 7 HOH A 1 601 2008 HOH HOH . 
K 7 HOH A 2 602 2004 HOH HOH . 
K 7 HOH A 3 603 2035 HOH HOH . 
K 7 HOH A 4 604 2002 HOH HOH . 
K 7 HOH A 5 605 2026 HOH HOH . 
K 7 HOH A 6 606 2005 HOH HOH . 
K 7 HOH A 7 607 2019 HOH HOH . 
K 7 HOH A 8 608 2037 HOH HOH . 
K 7 HOH A 9 609 2036 HOH HOH . 
K 7 HOH A 10 610 2023 HOH HOH . 
K 7 HOH A 11 611 2003 HOH HOH . 
K 7 HOH A 12 612 2022 HOH HOH . 
K 7 HOH A 13 613 2014 HOH HOH . 
K 7 HOH A 14 614 2017 HOH HOH . 
K 7 HOH A 15 615 2032 HOH HOH . 
K 7 HOH A 16 616 2038 HOH HOH . 
K 7 HOH A 17 617 2029 HOH HOH . 
K 7 HOH A 18 618 2021 HOH HOH . 
K 7 HOH A 19 619 2009 HOH HOH . 
K 7 HOH A 20 620 2006 HOH HOH . 
K 7 HOH A 21 621 2018 HOH HOH . 
K 7 HOH A 22 622 2024 HOH HOH . 
K 7 HOH A 23 623 2033 HOH HOH . 
K 7 HOH A 24 624 2020 HOH HOH . 
K 7 HOH A 25 625 2011 HOH HOH . 
K 7 HOH A 26 626 2027 HOH HOH . 
K 7 HOH A 27 627 2028 HOH HOH . 
K 7 HOH A 28 628 2010 HOH HOH . 
K 7 HOH A 29 629 2034 HOH HOH . 
K 7 HOH A 30 630 2013 HOH HOH . 
K 7 HOH A 31 631 2031 HOH HOH . 
K 7 HOH A 32 632 2012 HOH HOH . 
K 7 HOH A 33 633 2001 HOH HOH . 
K 7 HOH A 34 634 2025 HOH HOH . 
K 7 HOH A 35 635 2030 HOH HOH . 
K 7 HOH A 36 636 2007 HOH HOH . 
K 7 HOH A 37 637 2016 HOH HOH . 
K 7 HOH A 38 638 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . E 2 4.181 29.696 25.587 1 72.73 ? O21 78M 504 A 1 
HETATM 2 C C20 78M . . . E 2 3.096 29.036 25.039 1 58.32 ? C20 78M 504 A 1 
HETATM 3 C C18 78M . . . E 2 2.668 29.439 23.668 1 55.11 ? C18 78M 504 A 1 
HETATM 4 O O19 78M . . . E 2 1.3 29.586 23.625 1 66.01 ? O19 78M 504 A 1 
HETATM 5 C C17 78M . . . E 2 3.056 28.399 22.668 1 62.96 ? C17 78M 504 A 1 
HETATM 6 O O2 78M . . . E 2 2.05 27.638 22.095 1 47.83 ? O2 78M 504 A 1 
HETATM 7 C C1 78M . . . E 2 2.272 27.057 20.866 1 45.39 ? C1 78M 504 A 1 
HETATM 8 O O1 78M . . . E 2 2.646 27.748 19.928 1 61.79 ? O1 78M 504 A 1 
HETATM 9 C C2 78M . . . E 2 2.057 25.578 20.668 1 47.17 ? C2 78M 504 A 1 
HETATM 10 C C3 78M . . . E 2 2.245 25.037 19.279 1 38.63 ? C3 78M 504 A 1 
HETATM 11 C C4 78M . . . E 2 1.28 25.456 18.202 1 46.34 ? C4 78M 504 A 1 
HETATM 12 C C5 78M . . . E 2 1.875 25.922 16.905 1 41.37 ? C5 78M 504 A 1 
HETATM 13 C C6 78M . . . E 2 0.939 26.063 15.738 1 42.97 ? C6 78M 504 A 1 
HETATM 14 C C7 78M . . . E 2 1.557 26.249 14.373 1 56.64 ? C7 78M 504 A 1 
HETATM 15 C C8 78M . . . E 2 1.051 25.553 13.291 1 65.53 ? C8 78M 504 A 1 
HETATM 16 C C9 78M . . . E 2 -0.115 24.61 13.48 1 49.47 ? C9 78M 504 A 1 
HETATM 17 C C10 78M . . . E 2 -1.03 24.41 12.308 1 51.78 ? C10 78M 504 A 1 
HETATM 18 C C11 78M . . . E 2 -0.531 23.535 11.2 1 63.55 ? C11 78M 504 A 1 
HETATM 19 C C12 78M . . . E 2 -1.504 22.567 10.607 1 60.88 ? C12 78M 504 A 1 
HETATM 20 C C13 78M . . . E 2 -1.558 22.47 9.119 1 67.07 ? C13 78M 504 A 1 
HETATM 21 C C15 78M . . . E 2 -1.921 23.796 6.95 1 66.35 ? C15 78M 504 A 1 
HETATM 22 C C14 78M . . . E 2 -2.297 23.546 8.377 1 84.18 ? C14 78M 504 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#