data_4D2C
#
_model_server_result.job_id            sE9L7vBPI-Mtky8w35g_qQ 
_model_server_result.datetime_utc      '2024-11-23 17:53:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    4D2C 
#
_exptl.entry_id    4D2C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D2C 
_cell.length_a            102.06 
_cell.length_b            110.33 
_cell.length_c            110.74 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 56 n n 
C19 C18 78N sing 57 n n 
C18 O20 78N sing 58 n n 
C18 C17 78N sing 59 n n 
C17 O16 78N sing 60 n n 
O16 C8 78N sing 61 n n 
C8 O15 78N doub 62 n n 
C8 C7 78N sing 63 n n 
C7 C6 78N sing 64 n n 
C6 C5 78N sing 65 n n 
C5 C4 78N sing 66 n n 
C4 C3 78N sing 67 n n 
C3 C2 78N sing 68 n n 
C2 C1 78N doub 69 z n 
C1 C9 78N sing 70 n n 
C9 C10 78N sing 71 n n 
C10 C11 78N sing 72 n n 
C11 C12 78N sing 73 n n 
C12 C13 78N sing 74 n n 
C13 C14 78N sing 75 n n 
C15 C14 78N sing 76 n n 
O22 H22 78N sing 77 n n 
C19 H191 78N sing 78 n n 
C19 H192 78N sing 79 n n 
C18 H18 78N sing 80 n n 
O20 H20 78N sing 81 n n 
C17 H171 78N sing 82 n n 
C17 H172 78N sing 83 n n 
C7 H71 78N sing 84 n n 
C7 H72 78N sing 85 n n 
C6 H61C 78N sing 86 n n 
C6 H62C 78N sing 87 n n 
C5 H51C 78N sing 88 n n 
C5 H52C 78N sing 89 n n 
C4 H41C 78N sing 90 n n 
C4 H42C 78N sing 91 n n 
C3 H31C 78N sing 92 n n 
C3 H32C 78N sing 93 n n 
C2 H2 78N sing 94 n n 
C1 H1 78N sing 95 n n 
C9 H91C 78N sing 96 n n 
C9 H92C 78N sing 97 n n 
C10 H101 78N sing 98 n n 
C10 H102 78N sing 99 n n 
C11 H111 78N sing 100 n n 
C11 H112 78N sing 101 n n 
C12 H121 78N sing 102 n n 
C12 H122 78N sing 103 n n 
C13 H131 78N sing 104 n n 
C13 H132 78N sing 105 n n 
C14 H141 78N sing 106 n n 
C14 H142 78N sing 107 n n 
C15 H151 78N sing 108 n n 
C15 H152 78N sing 109 n n 
C15 H153 78N sing 110 n n 
#
_atom_sites.entry_id                     4D2C 
_atom_sites.fract_transf_matrix[1][1]    0.009798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 78M A 1 501 1473 78M 78M . 
C 2 78M A 1 502 1474 78M 78M . 
D 3 78N A 1 503 1475 78N 78N . 
E 2 78M A 1 504 1476 78M 78M . 
F 2 78M A 1 505 1477 78M 78M . 
G 3 78N A 1 506 1478 78N 78N . 
H 4 PO4 A 1 507 1479 PO4 PO4 . 
I 5 ALA A 1 508 32 ALA ALA . 
J 6 PHE A 1 509 33 PHE PHE . 
K 7 HOH A 1 601 2008 HOH HOH . 
K 7 HOH A 2 602 2004 HOH HOH . 
K 7 HOH A 3 603 2035 HOH HOH . 
K 7 HOH A 4 604 2002 HOH HOH . 
K 7 HOH A 5 605 2026 HOH HOH . 
K 7 HOH A 6 606 2005 HOH HOH . 
K 7 HOH A 7 607 2019 HOH HOH . 
K 7 HOH A 8 608 2037 HOH HOH . 
K 7 HOH A 9 609 2036 HOH HOH . 
K 7 HOH A 10 610 2023 HOH HOH . 
K 7 HOH A 11 611 2003 HOH HOH . 
K 7 HOH A 12 612 2022 HOH HOH . 
K 7 HOH A 13 613 2014 HOH HOH . 
K 7 HOH A 14 614 2017 HOH HOH . 
K 7 HOH A 15 615 2032 HOH HOH . 
K 7 HOH A 16 616 2038 HOH HOH . 
K 7 HOH A 17 617 2029 HOH HOH . 
K 7 HOH A 18 618 2021 HOH HOH . 
K 7 HOH A 19 619 2009 HOH HOH . 
K 7 HOH A 20 620 2006 HOH HOH . 
K 7 HOH A 21 621 2018 HOH HOH . 
K 7 HOH A 22 622 2024 HOH HOH . 
K 7 HOH A 23 623 2033 HOH HOH . 
K 7 HOH A 24 624 2020 HOH HOH . 
K 7 HOH A 25 625 2011 HOH HOH . 
K 7 HOH A 26 626 2027 HOH HOH . 
K 7 HOH A 27 627 2028 HOH HOH . 
K 7 HOH A 28 628 2010 HOH HOH . 
K 7 HOH A 29 629 2034 HOH HOH . 
K 7 HOH A 30 630 2013 HOH HOH . 
K 7 HOH A 31 631 2031 HOH HOH . 
K 7 HOH A 32 632 2012 HOH HOH . 
K 7 HOH A 33 633 2001 HOH HOH . 
K 7 HOH A 34 634 2025 HOH HOH . 
K 7 HOH A 35 635 2030 HOH HOH . 
K 7 HOH A 36 636 2007 HOH HOH . 
K 7 HOH A 37 637 2016 HOH HOH . 
K 7 HOH A 38 638 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . G 3 48.583 24.136 -26.271 1 68.92 ? O22 78N 506 A 1 
HETATM 2 C C19 78N . . . G 3 48.554 25.512 -26.392 1 62.89 ? C19 78N 506 A 1 
HETATM 3 C C18 78N . . . G 3 49.763 26.272 -25.965 1 62.45 ? C18 78N 506 A 1 
HETATM 4 O O20 78N . . . G 3 50.006 27.279 -26.88 1 61.58 ? O20 78N 506 A 1 
HETATM 5 C C17 78N . . . G 3 49.548 26.865 -24.608 1 49.17 ? C17 78N 506 A 1 
HETATM 6 O O16 78N . . . G 3 48.641 26.23 -23.771 1 63.58 ? O16 78N 506 A 1 
HETATM 7 C C8 78N . . . G 3 48.951 26.022 -22.439 1 62.73 ? C8 78N 506 A 1 
HETATM 8 O O15 78N . . . G 3 49.272 24.903 -22.054 1 66.39 ? O15 78N 506 A 1 
HETATM 9 C C7 78N . . . G 3 48.905 27.159 -21.445 1 58.8 ? C7 78N 506 A 1 
HETATM 10 C C6 78N . . . G 3 48.307 26.862 -20.093 1 51.68 ? C6 78N 506 A 1 
HETATM 11 C C5 78N . . . G 3 48.692 27.744 -18.931 1 44.11 ? C5 78N 506 A 1 
HETATM 12 C C4 78N . . . G 3 47.598 28.462 -18.191 1 58.3 ? C4 78N 506 A 1 
HETATM 13 C C3 78N . . . G 3 47.403 28.166 -16.725 1 59.79 ? C3 78N 506 A 1 
HETATM 14 C C2 78N . . . G 3 47.299 29.35 -15.785 1 63.84 ? C2 78N 506 A 1 
HETATM 15 C C1 78N . . . G 3 46.369 29.353 -14.758 1 65.08 ? C1 78N 506 A 1 
HETATM 16 C C9 78N . . . G 3 45.446 28.168 -14.567 1 66.88 ? C9 78N 506 A 1 
HETATM 17 C C10 78N . . . G 3 44.2 28.375 -13.747 1 67.58 ? C10 78N 506 A 1 
HETATM 18 C C11 78N . . . G 3 42.902 28.545 -14.477 1 56.48 ? C11 78N 506 A 1 
HETATM 19 C C12 78N . . . G 3 41.856 29.411 -13.852 1 55.56 ? C12 78N 506 A 1 
HETATM 20 C C13 78N . . . G 3 41.063 30.277 -14.77 1 54.68 ? C13 78N 506 A 1 
HETATM 21 C C15 78N . . . G 3 38.77 31.172 -15.498 1 47.13 ? C15 78N 506 A 1 
HETATM 22 C C14 78N . . . G 3 39.59 30.393 -14.518 1 54.75 ? C14 78N 506 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           22 
#