data_4D2C
#
_model_server_result.job_id            Pow7Qb8mN9pcyd22X8l_dg 
_model_server_result.datetime_utc      '2025-03-05 20:02:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    4D2C 
#
_exptl.entry_id    4D2C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.189 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENYLALANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D2C 
_cell.length_a            102.06 
_cell.length_b            110.33 
_cell.length_c            110.74 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4D2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H11 N O2' 
_chem_comp.formula_weight    165.189 
_chem_comp.id                PHE 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              PHENYLALANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PHE sing 334 n n 
N H PHE sing 335 n n 
N H2 PHE sing 336 n n 
CA C PHE sing 337 n n 
CA CB PHE sing 338 n n 
CA HA PHE sing 339 n n 
C O PHE doub 340 n n 
C OXT PHE sing 341 n n 
CB CG PHE sing 342 n n 
CB HB2 PHE sing 343 n n 
CB HB3 PHE sing 344 n n 
CG CD1 PHE doub 345 n y 
CG CD2 PHE sing 346 n y 
CD1 CE1 PHE sing 347 n y 
CD1 HD1 PHE sing 348 n n 
CD2 CE2 PHE doub 349 n y 
CD2 HD2 PHE sing 350 n n 
CE1 CZ PHE doub 351 n y 
CE1 HE1 PHE sing 352 n n 
CE2 CZ PHE sing 353 n y 
CE2 HE2 PHE sing 354 n n 
CZ HZ PHE sing 355 n n 
OXT HXT PHE sing 356 n n 
#
_atom_sites.entry_id                     4D2C 
_atom_sites.fract_transf_matrix[1][1]    0.009798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 78M A 1 501 1473 78M 78M . 
C 2 78M A 1 502 1474 78M 78M . 
D 3 78N A 1 503 1475 78N 78N . 
E 2 78M A 1 504 1476 78M 78M . 
F 2 78M A 1 505 1477 78M 78M . 
G 3 78N A 1 506 1478 78N 78N . 
H 4 PO4 A 1 507 1479 PO4 PO4 . 
I 5 ALA A 1 508 32 ALA ALA . 
J 6 PHE A 1 509 33 PHE PHE . 
K 7 HOH A 1 601 2008 HOH HOH . 
K 7 HOH A 2 602 2004 HOH HOH . 
K 7 HOH A 3 603 2035 HOH HOH . 
K 7 HOH A 4 604 2002 HOH HOH . 
K 7 HOH A 5 605 2026 HOH HOH . 
K 7 HOH A 6 606 2005 HOH HOH . 
K 7 HOH A 7 607 2019 HOH HOH . 
K 7 HOH A 8 608 2037 HOH HOH . 
K 7 HOH A 9 609 2036 HOH HOH . 
K 7 HOH A 10 610 2023 HOH HOH . 
K 7 HOH A 11 611 2003 HOH HOH . 
K 7 HOH A 12 612 2022 HOH HOH . 
K 7 HOH A 13 613 2014 HOH HOH . 
K 7 HOH A 14 614 2017 HOH HOH . 
K 7 HOH A 15 615 2032 HOH HOH . 
K 7 HOH A 16 616 2038 HOH HOH . 
K 7 HOH A 17 617 2029 HOH HOH . 
K 7 HOH A 18 618 2021 HOH HOH . 
K 7 HOH A 19 619 2009 HOH HOH . 
K 7 HOH A 20 620 2006 HOH HOH . 
K 7 HOH A 21 621 2018 HOH HOH . 
K 7 HOH A 22 622 2024 HOH HOH . 
K 7 HOH A 23 623 2033 HOH HOH . 
K 7 HOH A 24 624 2020 HOH HOH . 
K 7 HOH A 25 625 2011 HOH HOH . 
K 7 HOH A 26 626 2027 HOH HOH . 
K 7 HOH A 27 627 2028 HOH HOH . 
K 7 HOH A 28 628 2010 HOH HOH . 
K 7 HOH A 29 629 2034 HOH HOH . 
K 7 HOH A 30 630 2013 HOH HOH . 
K 7 HOH A 31 631 2031 HOH HOH . 
K 7 HOH A 32 632 2012 HOH HOH . 
K 7 HOH A 33 633 2001 HOH HOH . 
K 7 HOH A 34 634 2025 HOH HOH . 
K 7 HOH A 35 635 2030 HOH HOH . 
K 7 HOH A 36 636 2007 HOH HOH . 
K 7 HOH A 37 637 2016 HOH HOH . 
K 7 HOH A 38 638 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PHE . . . J 6 23.192 17.272 -3.547 1 61.33 ? N PHE 509 A 1 
HETATM 2 C CA PHE . . . J 6 23.805 17.816 -4.758 1 61.97 ? CA PHE 509 A 1 
HETATM 3 C C PHE . . . J 6 24.747 16.804 -5.407 1 57.46 ? C PHE 509 A 1 
HETATM 4 O O PHE . . . J 6 24.982 16.832 -6.615 1 62.17 ? O PHE 509 A 1 
HETATM 5 C CB PHE . . . J 6 24.573 19.102 -4.431 1 61.11 ? CB PHE 509 A 1 
HETATM 6 C CG PHE . . . J 6 24.726 20.036 -5.598 1 73.97 ? CG PHE 509 A 1 
HETATM 7 C CD1 PHE . . . J 6 25.749 19.861 -6.516 1 79.12 ? CD1 PHE 509 A 1 
HETATM 8 C CD2 PHE . . . J 6 23.851 21.098 -5.77 1 70.64 ? CD2 PHE 509 A 1 
HETATM 9 C CE1 PHE . . . J 6 25.89 20.722 -7.589 1 77.57 ? CE1 PHE 509 A 1 
HETATM 10 C CE2 PHE . . . J 6 23.987 21.96 -6.842 1 81.63 ? CE2 PHE 509 A 1 
HETATM 11 C CZ PHE . . . J 6 25.008 21.772 -7.75 1 79.2 ? CZ PHE 509 A 1 
HETATM 12 O OXT PHE . . . J 6 25.299 15.932 -4.735 1 53.92 ? OXT PHE 509 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#