data_4D2D # _model_server_result.job_id TO50ujIl9Jh9i7b7cbrKdA _model_server_result.datetime_utc '2024-11-25 21:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1480}' # _entry.id 4D2D # _exptl.entry_id 4D2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D2D _cell.length_a 103.38 _cell.length_b 110.7 _cell.length_c 110.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 H N N # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 56 n n C19 C18 78N sing 57 n n C18 O20 78N sing 58 n n C18 C17 78N sing 59 n n C17 O16 78N sing 60 n n O16 C8 78N sing 61 n n C8 O15 78N doub 62 n n C8 C7 78N sing 63 n n C7 C6 78N sing 64 n n C6 C5 78N sing 65 n n C5 C4 78N sing 66 n n C4 C3 78N sing 67 n n C3 C2 78N sing 68 n n C2 C1 78N doub 69 z n C1 C9 78N sing 70 n n C9 C10 78N sing 71 n n C10 C11 78N sing 72 n n C11 C12 78N sing 73 n n C12 C13 78N sing 74 n n C13 C14 78N sing 75 n n C15 C14 78N sing 76 n n O22 H22 78N sing 77 n n C19 H191 78N sing 78 n n C19 H192 78N sing 79 n n C18 H18 78N sing 80 n n O20 H20 78N sing 81 n n C17 H171 78N sing 82 n n C17 H172 78N sing 83 n n C7 H71 78N sing 84 n n C7 H72 78N sing 85 n n C6 H61C 78N sing 86 n n C6 H62C 78N sing 87 n n C5 H51C 78N sing 88 n n C5 H52C 78N sing 89 n n C4 H41C 78N sing 90 n n C4 H42C 78N sing 91 n n C3 H31C 78N sing 92 n n C3 H32C 78N sing 93 n n C2 H2 78N sing 94 n n C1 H1 78N sing 95 n n C9 H91C 78N sing 96 n n C9 H92C 78N sing 97 n n C10 H101 78N sing 98 n n C10 H102 78N sing 99 n n C11 H111 78N sing 100 n n C11 H112 78N sing 101 n n C12 H121 78N sing 102 n n C12 H122 78N sing 103 n n C13 H131 78N sing 104 n n C13 H132 78N sing 105 n n C14 H141 78N sing 106 n n C14 H142 78N sing 107 n n C15 H151 78N sing 108 n n C15 H152 78N sing 109 n n C15 H153 78N sing 110 n n # _atom_sites.entry_id 4D2D _atom_sites.fract_transf_matrix[1][1] 0.009673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 78M A 1 1479 1479 78M 78M . D 4 78N A 1 1480 1480 78N 78N . E 4 78N A 1 1481 1481 78N 78N . F 3 78M A 1 1482 1482 78M 78M . G 3 78M A 1 1483 1483 78M 78M . H 4 78N A 1 1484 1484 78N 78N . I 5 PO4 A 1 1485 1485 PO4 PO4 . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH A 13 2013 2013 HOH HOH . J 6 HOH A 14 2014 2014 HOH HOH . J 6 HOH A 15 2015 2015 HOH HOH . J 6 HOH A 16 2016 2016 HOH HOH . J 6 HOH A 17 2017 2017 HOH HOH . J 6 HOH A 18 2018 2018 HOH HOH . J 6 HOH A 19 2019 2019 HOH HOH . J 6 HOH A 20 2020 2020 HOH HOH . J 6 HOH A 21 2021 2021 HOH HOH . J 6 HOH A 22 2022 2022 HOH HOH . J 6 HOH A 23 2023 2023 HOH HOH . J 6 HOH A 24 2024 2024 HOH HOH . J 6 HOH A 25 2025 2025 HOH HOH . J 6 HOH A 26 2026 2026 HOH HOH . J 6 HOH A 27 2027 2027 HOH HOH . J 6 HOH A 28 2028 2028 HOH HOH . J 6 HOH A 29 2029 2029 HOH HOH . J 6 HOH A 30 2030 2030 HOH HOH . J 6 HOH A 31 2031 2031 HOH HOH . J 6 HOH A 32 2032 2032 HOH HOH . J 6 HOH A 33 2033 2033 HOH HOH . J 6 HOH A 34 2034 2034 HOH HOH . J 6 HOH A 35 2035 2035 HOH HOH . J 6 HOH A 36 2036 2036 HOH HOH . J 6 HOH A 37 2037 2037 HOH HOH . J 6 HOH A 38 2038 2038 HOH HOH . J 6 HOH A 39 2039 2039 HOH HOH . J 6 HOH A 40 2040 2040 HOH HOH . J 6 HOH A 41 2041 2041 HOH HOH . J 6 HOH A 42 2042 2042 HOH HOH . J 6 HOH A 43 2043 2043 HOH HOH . J 6 HOH A 44 2044 2044 HOH HOH . J 6 HOH A 45 2045 2045 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . D 4 -9.641 -30.811 21.355 1 59.61 ? O22 78N 1480 A 1 HETATM 2 C C19 78N . . . D 4 -8.547 -30.437 22.113 1 62.37 ? C19 78N 1480 A 1 HETATM 3 C C18 78N . . . D 4 -7.273 -30.111 21.409 1 57.08 ? C18 78N 1480 A 1 HETATM 4 O O20 78N . . . D 4 -6.271 -29.96 22.344 1 71.14 ? O20 78N 1480 A 1 HETATM 5 C C17 78N . . . D 4 -6.877 -31.192 20.452 1 58.52 ? C17 78N 1480 A 1 HETATM 6 O O16 78N . . . D 4 -5.86 -30.905 19.553 1 65.7 ? O16 78N 1480 A 1 HETATM 7 C C8 78N . . . D 4 -6.133 -30.835 18.202 1 59.97 ? C8 78N 1480 A 1 HETATM 8 O O15 78N . . . D 4 -6.818 -31.696 17.663 1 79.69 ? O15 78N 1480 A 1 HETATM 9 C C7 78N . . . D 4 -5.589 -29.697 17.38 1 45.38 ? C7 78N 1480 A 1 HETATM 10 C C6 78N . . . D 4 -5.616 -29.857 15.888 1 43.76 ? C6 78N 1480 A 1 HETATM 11 C C5 78N . . . D 4 -4.78 -28.9 15.084 1 42.02 ? C5 78N 1480 A 1 HETATM 12 C C4 78N . . . D 4 -5.497 -27.835 14.311 1 53.23 ? C4 78N 1480 A 1 HETATM 13 C C3 78N . . . D 4 -5.27 -27.829 12.826 1 56.04 ? C3 78N 1480 A 1 HETATM 14 C C2 78N . . . D 4 -3.894 -28.236 12.347 1 54.37 ? C2 78N 1480 A 1 HETATM 15 C C1 78N . . . D 4 -3.116 -27.348 11.626 1 65.65 ? C1 78N 1480 A 1 HETATM 16 C C9 78N . . . D 4 -3.637 -25.965 11.311 1 57.7 ? C9 78N 1480 A 1 HETATM 17 C C10 78N . . . D 4 -3.166 -25.316 10.039 1 58.43 ? C10 78N 1480 A 1 HETATM 18 C C11 78N . . . D 4 -4.155 -24.475 9.29 1 51.85 ? C11 78N 1480 A 1 HETATM 19 C C12 78N . . . D 4 -3.624 -23.319 8.507 1 51.71 ? C12 78N 1480 A 1 HETATM 20 C C13 78N . . . D 4 -3.587 -23.432 7.022 1 65.58 ? C13 78N 1480 A 1 HETATM 21 C C15 78N . . . D 4 -3.446 -20.884 6.93 1 59.65 ? C15 78N 1480 A 1 HETATM 22 C C14 78N . . . D 4 -3.227 -22.197 6.253 1 64.85 ? C14 78N 1480 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #