data_4D2E # _model_server_result.job_id xHuoVz6NZCmn5S7-hMnRkw _model_server_result.datetime_utc '2024-11-25 10:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1122}' # _entry.id 4D2E # _exptl.entry_id 4D2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D2E _cell.length_a 75.29 _cell.length_b 91.82 _cell.length_c 143.92 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,CA,DA,EA 1 1 D,E,F,U,V,W,X,Y,Z,AA,BA,FA,GA,HA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 Y ZN ZN . D ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 Y ZN ZN . D ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 D OE2 GLU 85 D GLU 76 1_555 Y ZN ZN . D ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 D OE1 GLU 85 D GLU 76 1_555 Y ZN ZN . D ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc5 D OD2 ASP 116 D ASP 107 1_555 U NA NA . D NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 U NA NA . D NA 1122 1_555 FA O HOH . D HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc7 U NA NA . D NA 1122 1_555 FA O HOH . D HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc8 U NA NA . D NA 1122 1_555 FA O HOH . D HOH 2032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc9 V OA1 FLC . D FLC 1123 1_555 Y ZN ZN . D ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc10 W OG2 FLC . D FLC 1124 1_555 Y ZN ZN . D ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D2E _atom_sites.fract_transf_matrix[1][1] 0.013282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78M A 1 1122 1122 78M 78M . H 2 78M A 1 1123 1123 78M 78M . I 2 78M A 1 1124 1124 78M 78M . J 2 78M A 1 1125 1125 78M 78M . K 3 78N A 1 1126 1126 78N 78N . L 3 78N B 1 1121 1121 78N 78N . M 3 78N B 1 1122 1122 78N 78N . N 3 78N B 1 1123 1123 78N 78N . O 2 78M C 1 1122 1122 78M 78M . P 2 78M C 1 1123 1123 78M 78M . Q 3 78N C 1 1124 1124 78N 78N . R 3 78N C 1 1125 1125 78N 78N . S 3 78N C 1 1126 1126 78N 78N . T 3 78N C 1 1127 1127 78N 78N . U 4 NA D 1 1122 1122 NA NA . V 5 FLC D 1 1123 1123 FLC FLC . W 5 FLC D 1 1124 1124 FLC FLC . X 2 78M D 1 1125 1125 78M 78M . Y 6 ZN D 1 1126 1126 ZN ZN . Z 3 78N D 1 1127 1127 78N 78N . AA 3 78N D 1 1128 1128 78N 78N . BA 3 78N E 1 1122 1122 78N 78N . CA 7 HOH A 1 2001 2001 HOH HOH . CA 7 HOH A 2 2002 2002 HOH HOH . CA 7 HOH A 3 2003 2003 HOH HOH . CA 7 HOH A 4 2004 2004 HOH HOH . CA 7 HOH A 5 2005 2005 HOH HOH . CA 7 HOH A 6 2006 2006 HOH HOH . CA 7 HOH A 7 2007 2007 HOH HOH . CA 7 HOH A 8 2008 2008 HOH HOH . CA 7 HOH A 9 2009 2009 HOH HOH . CA 7 HOH A 10 2010 2010 HOH HOH . CA 7 HOH A 11 2011 2011 HOH HOH . CA 7 HOH A 12 2012 2012 HOH HOH . CA 7 HOH A 13 2013 2013 HOH HOH . CA 7 HOH A 14 2014 2014 HOH HOH . CA 7 HOH A 15 2015 2015 HOH HOH . CA 7 HOH A 16 2016 2016 HOH HOH . CA 7 HOH A 17 2017 2017 HOH HOH . CA 7 HOH A 18 2018 2018 HOH HOH . CA 7 HOH A 19 2019 2019 HOH HOH . CA 7 HOH A 20 2020 2020 HOH HOH . CA 7 HOH A 21 2021 2021 HOH HOH . CA 7 HOH A 22 2022 2022 HOH HOH . CA 7 HOH A 23 2023 2023 HOH HOH . CA 7 HOH A 24 2024 2024 HOH HOH . CA 7 HOH A 25 2025 2025 HOH HOH . CA 7 HOH A 26 2026 2026 HOH HOH . CA 7 HOH A 27 2027 2027 HOH HOH . CA 7 HOH A 28 2028 2028 HOH HOH . CA 7 HOH A 29 2029 2029 HOH HOH . CA 7 HOH A 30 2030 2030 HOH HOH . CA 7 HOH A 31 2031 2031 HOH HOH . CA 7 HOH A 32 2032 2032 HOH HOH . CA 7 HOH A 33 2033 2033 HOH HOH . CA 7 HOH A 34 2034 2034 HOH HOH . CA 7 HOH A 35 2035 2035 HOH HOH . DA 7 HOH B 1 2001 2001 HOH HOH . DA 7 HOH B 2 2002 2002 HOH HOH . DA 7 HOH B 3 2003 2003 HOH HOH . DA 7 HOH B 4 2004 2004 HOH HOH . DA 7 HOH B 5 2005 2005 HOH HOH . DA 7 HOH B 6 2006 2006 HOH HOH . DA 7 HOH B 7 2007 2007 HOH HOH . DA 7 HOH B 8 2008 2008 HOH HOH . DA 7 HOH B 9 2009 2009 HOH HOH . DA 7 HOH B 10 2010 2010 HOH HOH . DA 7 HOH B 11 2011 2011 HOH HOH . DA 7 HOH B 12 2012 2012 HOH HOH . DA 7 HOH B 13 2013 2013 HOH HOH . DA 7 HOH B 14 2014 2014 HOH HOH . DA 7 HOH B 15 2015 2015 HOH HOH . DA 7 HOH B 16 2016 2016 HOH HOH . DA 7 HOH B 17 2017 2017 HOH HOH . DA 7 HOH B 18 2018 2018 HOH HOH . EA 7 HOH C 1 2001 2001 HOH HOH . EA 7 HOH C 2 2002 2002 HOH HOH . EA 7 HOH C 3 2003 2003 HOH HOH . EA 7 HOH C 4 2004 2004 HOH HOH . EA 7 HOH C 5 2005 2005 HOH HOH . EA 7 HOH C 6 2006 2006 HOH HOH . EA 7 HOH C 7 2007 2007 HOH HOH . EA 7 HOH C 8 2008 2008 HOH HOH . EA 7 HOH C 9 2009 2009 HOH HOH . EA 7 HOH C 10 2010 2010 HOH HOH . EA 7 HOH C 11 2011 2011 HOH HOH . EA 7 HOH C 12 2012 2012 HOH HOH . EA 7 HOH C 13 2013 2013 HOH HOH . EA 7 HOH C 14 2014 2014 HOH HOH . EA 7 HOH C 15 2015 2015 HOH HOH . EA 7 HOH C 16 2016 2016 HOH HOH . EA 7 HOH C 17 2017 2017 HOH HOH . FA 7 HOH D 1 2001 2001 HOH HOH . FA 7 HOH D 2 2002 2002 HOH HOH . FA 7 HOH D 3 2003 2003 HOH HOH . FA 7 HOH D 4 2004 2004 HOH HOH . FA 7 HOH D 5 2005 2005 HOH HOH . FA 7 HOH D 6 2006 2006 HOH HOH . FA 7 HOH D 7 2007 2007 HOH HOH . FA 7 HOH D 8 2008 2008 HOH HOH . FA 7 HOH D 9 2009 2009 HOH HOH . FA 7 HOH D 10 2010 2010 HOH HOH . FA 7 HOH D 11 2011 2011 HOH HOH . FA 7 HOH D 12 2012 2012 HOH HOH . FA 7 HOH D 13 2013 2013 HOH HOH . FA 7 HOH D 14 2014 2014 HOH HOH . FA 7 HOH D 15 2015 2015 HOH HOH . FA 7 HOH D 16 2016 2016 HOH HOH . FA 7 HOH D 17 2017 2017 HOH HOH . FA 7 HOH D 18 2018 2018 HOH HOH . FA 7 HOH D 19 2019 2019 HOH HOH . FA 7 HOH D 20 2020 2020 HOH HOH . FA 7 HOH D 21 2021 2021 HOH HOH . FA 7 HOH D 22 2022 2022 HOH HOH . FA 7 HOH D 23 2023 2023 HOH HOH . FA 7 HOH D 24 2024 2024 HOH HOH . FA 7 HOH D 25 2025 2025 HOH HOH . FA 7 HOH D 26 2026 2026 HOH HOH . FA 7 HOH D 27 2027 2027 HOH HOH . FA 7 HOH D 28 2028 2028 HOH HOH . FA 7 HOH D 29 2029 2029 HOH HOH . FA 7 HOH D 30 2030 2030 HOH HOH . FA 7 HOH D 31 2031 2031 HOH HOH . FA 7 HOH D 32 2032 2032 HOH HOH . FA 7 HOH D 33 2033 2033 HOH HOH . FA 7 HOH D 34 2034 2034 HOH HOH . GA 7 HOH E 1 2001 2001 HOH HOH . GA 7 HOH E 2 2002 2002 HOH HOH . GA 7 HOH E 3 2003 2003 HOH HOH . GA 7 HOH E 4 2004 2004 HOH HOH . GA 7 HOH E 5 2005 2005 HOH HOH . GA 7 HOH E 6 2006 2006 HOH HOH . GA 7 HOH E 7 2007 2007 HOH HOH . GA 7 HOH E 8 2008 2008 HOH HOH . GA 7 HOH E 9 2009 2009 HOH HOH . GA 7 HOH E 10 2010 2010 HOH HOH . GA 7 HOH E 11 2011 2011 HOH HOH . GA 7 HOH E 12 2012 2012 HOH HOH . GA 7 HOH E 13 2013 2013 HOH HOH . GA 7 HOH E 14 2014 2014 HOH HOH . GA 7 HOH E 15 2015 2015 HOH HOH . HA 7 HOH F 1 2001 2001 HOH HOH . HA 7 HOH F 2 2002 2002 HOH HOH . HA 7 HOH F 3 2003 2003 HOH HOH . HA 7 HOH F 4 2004 2004 HOH HOH . HA 7 HOH F 5 2005 2005 HOH HOH . HA 7 HOH F 6 2006 2006 HOH HOH . HA 7 HOH F 7 2007 2007 HOH HOH . HA 7 HOH F 8 2008 2008 HOH HOH . HA 7 HOH F 9 2009 2009 HOH HOH . HA 7 HOH F 10 2010 2010 HOH HOH . HA 7 HOH F 11 2011 2011 HOH HOH . HA 7 HOH F 12 2012 2012 HOH HOH . HA 7 HOH F 13 2013 2013 HOH HOH . HA 7 HOH F 14 2014 2014 HOH HOH . HA 7 HOH F 15 2015 2015 HOH HOH . HA 7 HOH F 16 2016 2016 HOH HOH . HA 7 HOH F 17 2017 2017 HOH HOH . HA 7 HOH F 18 2018 2018 HOH HOH . HA 7 HOH F 19 2019 2019 HOH HOH . HA 7 HOH F 20 2020 2020 HOH HOH . HA 7 HOH F 21 2021 2021 HOH HOH . HA 7 HOH F 22 2022 2022 HOH HOH . HA 7 HOH F 23 2023 2023 HOH HOH . HA 7 HOH F 24 2024 2024 HOH HOH . HA 7 HOH F 25 2025 2025 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 4 _atom_site.Cartn_x -31.08 _atom_site.Cartn_y -6.069 _atom_site.Cartn_z 2.974 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1122 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #